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(-) Description

Title :  PHOSPHATIDYLINOSITOL 4-KINASE III BETA CRYSTALLIZED WITH MI103 INHIBITOR
 
Authors :  D. Chalupska, E. Boura
Date :  29 Aug 14  (Deposition) - 20 May 15  (Release) - 27 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.41
Chains :  Asym./Biol. Unit :  A
Keywords :  Inhibitor, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Mejdrova, D. Chalupska, M. Kogler, M. Sala, P. Plackova, A. Baumlova, H. Hrebabecky, E. Prochazkova, M. Dejmek, R. Guillon, D. Strunin, J. Weber, G. Lee, G. Birkus, H. Mertlikova-Kaiserova, E. Boura, R. Nencka
Highly Selective Phosphatidylinositol 4-Kinase Iii Beta Inhibitors And Structural Insight Into Their Mode Of Action
J. Med. Chem. V. 58 3767 2015
PubMed-ID: 25897704  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00499

(-) Compounds

Molecule 1 - PHOSPHATIDYLINOSITOL 4-KINASE BETA,PHOSPHATIDYLINOSITOL 4- KINASE BETA
    Chains: A
    EC Number: 2.7.1.67
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 128-422, UNP RESIDUES 523-799
    Gene: PI4KB, PIK4CB
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PTDINS 4-KINASE BETA,NPIK,PI4K92,PTDINS 4-KINASE BETA,NPIK, PI4K92

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
13K71Ligand/Ion6-CHLORO-3-(3,4-DIMETHOXYPHENYL)-2-METHYLIMIDAZO[1,2-B]PYRIDAZIN-8-AMINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:562 , LYS A:564 , GLU A:572 , TYR A:598 , ILE A:610 , GLU A:611 , PRO A:612 , VAL A:613 , LEU A:678 , ASP A:689binding site for residue 3K7 A 801

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WAG)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Leu A:138 -Phe A:139
2Leu A:363 -Pro A:364

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WAG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WAG)

(-) Exons   (0, 0)

(no "Exon" information available for 4WAG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:462
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.............eeeee.hhhhhee........eeeeeeeee.................hhhhhhhh.hhhhhh..eeeeeeeee....hhhhhhhhhhhhhhhhhhhhh..........ee......eee........hhhhhhhhh.hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.....hhh.eee.....eee.......................hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wag A 130 LLRLFESKLFDISMAISYLYNSKEPGVQAYIGNRLFCFRNEDVDFYLPQLLNMYIHMDEDVGDAIKPYIVHRCRQSINFSLQCALLLGAYSSDMSFSSPVRLAPEREFIKSLMAIGKRLATLPTKEQKTQRLISELSLLNHKLPARVWLPTAGFDHHVVRVPHTQAVVLNSKDKAPYLIYVEVLECENFDTTSVPARIPEWQEKVRRIREGSPYGHLPNWRLLSVIVKCGDDLRQELLAFQVLKQLQSIWEQERVPLWIKPYKILVISADSGMIEPVVNAVSIHQVKKQSQLSLLDYFLQEHGSYTTEAFLSAQRNFVQSCAGYCLVCYLLQVKDRHNGNILLDAEGHIIHIDFGFILSSSPRNLGFETSAFKLTTEFVDVMGGLDGDMFNYYKMLMLQGLIAARKHMDKVVQIVEIMQQGSQLPCFHGSSTIRNLKERFHMSMTEEQLQLLVEQMVDGSMR 798
                                   139       149       159       169       179       189       199       209       219   ||  320       330       340       350       360       370       380       390       400       410       420|      546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796  
                                                                                                                       223|                                                                                                      420|                                                                                                                                                                                                                                                                     
                                                                                                                        315                                                                                                       537
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WAG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WAG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WAG)

(-) Gene Ontology  (25, 25)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PI4KB_HUMAN | Q9UBF8: 2n73 4d0l 4d0m 4wae 5c46 5c4g 5euq 5fbl 5fbq 5fbr 5fbv 5fbw 5lx2 5nas

(-) Related Entries Specified in the PDB File

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