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(-) Description

Title :  CRYSTAL STRUCTURE OF RIFAMPIN PHOSPHOTRANSFERASE RPH-LM FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH ADP AND MAGNESIUM
 
Authors :  P. J. Stogios, Z. Wawrzak, T. Skarina, V. Yim, A. Savchenko, W. F. Anders For Structural Genomics Of Infectious Diseases (Csgid)
Date :  14 Dec 15  (Deposition) - 13 Jan 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.59
Chains :  Asym./Biol. Unit :  A
Keywords :  Antibiotic Resistance, Rifamycins, Rifampin, Phosphotransferase, Atp Grasp Domain, Phosphohistidine Domain, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Stogios, G. Cox, P. Spanogiannopoulos, M. C. Pillon, N. Waglechner, T. Skarina, K. Koteva, A. Guarne, A. Savchenko, G. D. Wright
Rifampin Phosphotransferase Is An Unusual Antibiotic Resistance Kinase.
Nat Commun V. 7 11343 2016
PubMed-ID: 27103605  |  Reference-DOI: 10.1038/NCOMMS11343

(-) Compounds

Molecule 1 - PHOSPHOENOLPYRUVATE SYNTHASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG53
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: LISTERIA MONOCYTOGENES SEROTYPE 4B STR. F2365
    Organism Taxid: 265669

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:297 , GLN A:309 , ADP A:902binding site for residue MG A 901
2AC2SOFTWARELYS A:22 , ARG A:117 , GLN A:133 , THR A:136 , GLN A:183 , GLN A:184 , ILE A:186 , GLU A:217 , GLU A:297 , CYS A:299 , GLN A:309 , MG A:901 , HOH A:1009binding site for residue ADP A 902

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FBS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FBS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FBS)

(-) Exons   (0, 0)

(no "Exon" information available for 5FBS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:787
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.hhh...hhhhhhhhhhhhhhhh.........eeee..hhhhhh..hhhhh.........hhhhhhhhh..hhhhhhhhhhhhhh.......eeeeee......eeeee.hhhhhhhhhhhhhhhhhh..........eeeeee.....eeeeee...........eeeeeee.............eeeee....eeeee.....eeee......eeee.hhhhhh.....hhhhhhhhhhhhhhhhhhhh..eeeeeeee..eeeeeeeee................eeeehhhhh......hhhhhhhhhhhh....eee..eeeee.hhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh....hhhhhhhhhhhhhhhhhh.hhhhhhhhhh....hhhhh.....hhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....eee....ee................eeee...eeeeeee............eeeee...hhhhhhhhh.eeeeee......hhhhhhhhhhh..eee...hhhhhh....eeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fbs A   2 KPYVLKFQEIRPHSEALVGGKGMNLGACSNIEGVHVPAGFCLTTEAYKRTLNEFTQLLQRLSEISETIRTLIQHTQIPSEIASYMDATLLDVGGYEMPFAVRSSAAGQHDTYLNIIGKDALLQHISMCWASLFTERAIIRKVQLAVVIQQMISPEASGILFTADPITSNRKSLSIDASFGLGEALVSGLVSADSYTVRENTITNKIIATKKLAIYSLKEGGTETRILEKSQQTKQTLTDQQIIQLAKLGRKIEAYFGKPQDIEWCLAEGAFYIVQSRPITTLYPIPEVNEPGNRVYISVAHQQMMTDAMKPLGLSFYLMTTPATMYTAGGRLFVDITQSLSAKVSRDMMVNSLGQSDPLIKDALLTVINKKGFLPPLPTDSSSVFELVRNSENSIKHLKQSIETKSGSDLFDFIVEDLEELKRVLFNPTSIDAIMAGMDASNVADKLSESAPNNITSQMGLELLDVADVIRPYPAVRAYLEQTKNPDFMNELATLEGGAETKKALEDYLQKYGMRCAGEIDLTKTRWIENPLTLIPLILSNIKNFDSSASMHKFAQGEKEAFHKEQEILRAMETKEKIDILRHFIGYREYPKYGMINRYFIYKLALLRAGEQLVKDGILQEHEDIYFLYFEELREVVRTGQVDYELINARKRDFATFEKLTPPRILTSDGEMINGEYKRENLPKDAILGLPVSSGTVEGRARVILEMEKADLEDGDILVTAYTDPSWTPAFVSIKGLVTEVGGLMTHGAVIAREYGLPAVVGVENATTIIKDGQQIRINGTEGYIEI 865
                                    11        21        31        41        51||      64 ||     85        95       105       115    || 135       145       155       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       433       443       453       463       473       483       493||     517       527       537       547       557       567       577       587       597       607       617       627       637|      658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858       
                                                                             52|        66|                                       120|                              164|                                                                                                                                                                                                                                            413|                                                          494|                                                                                                                             637|                                                                                                                                                                                                                        
                                                                              56         78                                        131                               174                                                                                                                                                                                                                                             433                                                           509                                                                                                                              649
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 Classification and Annotation

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(-) Gene Ontology  (0, 0)

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5fbt
5fbu RELATED ID: IDP95066 RELATED DB: TARGETTRACK