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(-) Description

Title :  CRYSTAL STRUCTURE OF RIFAMPIN PHOSPHOTRANSFERASE RPH-LM FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH RIFAMPIN
 
Authors :  P. J. Stogios, Z. Wawrzak, T. Skarina, V. Yim, A. Savchenko, W. F. Anders For Structural Genomics Of Infectious Diseases (Csgid)
Date :  14 Dec 15  (Deposition) - 30 Dec 15  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Antibiotic Resistance, Rifamycins, Rifampin, Phosphotransferase, Atp Grasp Domain, Phosphohistidine Domain, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Transferase- Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Stogios, G. Cox, P. Spanogiannopoulos, M. C. Pillon, N. Waglechner, T. Skarina, K. Koteva, A. Guarne, A. Savchenko, G. D. Wright
Rifampin Phosphotransferase Is An Unusual Antibiotic Resistance Kinase.
Nat Commun V. 7 11343 2016
PubMed-ID: 27103605  |  Reference-DOI: 10.1038/NCOMMS11343

(-) Compounds

Molecule 1 - PHOSPHOENOLPYRUVATE SYNTHASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG53
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: LMNIHS28_01948
    Organism Scientific: LISTERIA MONOCYTOGENES SEROTYPE 4B STR. F2365
    Organism Taxid: 265669

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 25)

Asymmetric/Biological Unit (3, 25)
No.NameCountTypeFull Name
15WQ1Ligand/IonRIFAMPIN
2CL1Ligand/IonCHLORIDE ION
3MSE23Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:333 , TYR A:351 , THR A:355 , PRO A:356 , ALA A:357 , VAL A:368 , MSE A:383 , LEU A:387 , PHE A:479 , HOH A:1004 , HOH A:1040binding site for residue 5WQ A 901
2AC2SOFTWARELYS A:551 , ASN A:552binding site for residue CL A 902

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FBT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FBT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FBT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FBT)

(-) Exons   (0, 0)

(no "Exon" information available for 5FBT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:769
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....hhhhhhhhhhhhh............eee.hhhh..hhhhhhh..hhhhh.hhhhhhhhh....hhhhhhhhh......hhhhhhhhhhhh......ee........eeeeee...........eeeeeee..........eeeee....eeeee..............hhhhh...hhhhhhhhhhhhhhhhhhhh..eeeeeeee..eeeeeeeee................eeeehhhhhh.....hhhhhhhhhh.....eeee..eeeee.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhh.....hhhhh.....hhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....eee....ee.............ee.eeee..eeeeeeee..hhhhh.....eeeee...hhhhhhhh....eeee........hhhhhhhh...eee...hhhhhh....eeeee....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fbt A   2 KPYVLKFQEISEALVGGKGmNLGACSNIEGVHVPAGFCLTTEAYKEFTQLLQRLAIREISETIRTLIQHTQIPSEIASYmDATmPFAVLLQHISmCWASLFTEVQLAVVIQQmISPEASGILFTADPITSNRKSLSIDASFGLGESGLVSADSYTVRENTITNKIIATKKLAETRILEKSQQTKQTLTDQQIIQLAKLGRKIEAYFGKPQDIEWCLAEGAFYIVQSRPITTLYPIPEVNEPGNRVYISVAHQQmmTDAmKPLGLSFYLmTTPATmYTAGGRLFVDITQSLSAKVSRDmmVNSLGQSDPLIKDALLTVINKKGFLPPLPTVRSIPDSSSVFELVRNSENSIKHLKQSIETKSGSDLFDFIVEDLEELKRVLFNPTSIDAImAGmDASAWLNEHIYQWLGEKNVADKLSESAPNNITSQmGLELLDVADVIRPYPAVRAYLEQTKNPDFmNELATLEGGAETKKALEDYLQKYGmRCAGEIDLTKTRWIENPLTLIPLILSNIKNFDSSASmHKFAQGEKEAFHKEQEILRRLQELPDGEQKAmETKEKIDILRHFIGYREYPKYGmINRYFIYKLALLRAGEQLVKDGILQEHEDIYFLYFEELREVVRTGQVDYELINARKRDFATFEKLTPPRILTSDGEmINGEYKRENLPKDAILGLPVSSGTVEGRARVILEmEKADLEDGDILVTAYTDPSWTPAFVSIKGLVTEVGGLmTHGAVIAREYGLPAVVGVENATTIIKDGQQIRINGTEGYIEILD 867
                                    11|       24        34        44    ||  61   ||   80        90       100  ||   147    |  157  ||   182  |    192       202       212    || 225       235       245 ||    264       274       284       294       304       314       324       334   ||  344       354    |  364       374       384       394       404       428       438       448       458       468       478       488  |    498       508       518       528       538       548       558       568       578  |    588       598       608       618       628       638       648 |     658       668    |  678       688       698       708       718       728       738       748 |     758       768       778      |788       798       808       818    |  828       838       848       858         
                                    11|       24-MSE                   49|      65|                      100-MSE 116|     |     160|      185-MSE                         217|                       247|                                                                              338-MSE|       353-MSE |                    382-MSE                        413|                                                         488-MSE                               526-MSE                       556-MSE                  581-MSE                              618-MSE                         650-MSE                673-MSE                                                                      750-MSE                            785-MSE                               823-MSE                                        
                                     15                                 57       75                         103|  146     |      176                                       221                        257                                                                               339-MSE             359-MSE                 383-MSE                        428                                                            491-MSE                                                                                                                                                                                                                                                                                                                                                                                    
                                                                                                             112-MSE    152-MSE                                                                                                                                                             343-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FBT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FBT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FBT)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

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UniProtKB/TrEMBL
        A0A0X1KHF9_L | A0A0X1KHF9: 5fbu

(-) Related Entries Specified in the PDB File

5fbs 5fbu