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(-) Description

Title :  CRYSTAL STRUCTURE OF RIFAMPIN PHOSPHOTRANSFERASE RPH-LM FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH RIFAMPIN-PHOSPHATE
 
Authors :  P. J. Stogios, Z. Wawrzak, T. Skarina, V. Yim, A. Savchenko, W. F. Anders For Structural Genomics Of Infectious Diseases (Csgid)
Date :  14 Dec 15  (Deposition) - 30 Dec 15  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym./Biol. Unit :  A
Keywords :  Antibiotic Resistance, Rifamycins, Rifampin, Phosphotransferase, Atp Grasp Domain, Phosphohistidine Domain, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Transferase- Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Stogios, G. Cox, P. Spanogiannopoulos, M. C. Pillon, N. Waglechner, T. Skarina, K. Koteva, A. Guarne, A. Savchenko, G. D. Wright
Rifampin Phosphotransferase Is An Unusual Antibiotic Resistance Kinase.
Nat Commun V. 7 11343 2016
PubMed-ID: 27103605  |  Reference-DOI: 10.1038/NCOMMS11343

(-) Compounds

Molecule 1 - PHOSPHOENOLPYRUVATE SYNTHASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG53
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: LMNIHS28_01948
    Organism Scientific: LISTERIA MONOCYTOGENES SEROTYPE 4B STR. F2365
    Organism Taxid: 265669

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
15WP1Ligand/IonRIFAMPIN-PHOSPHATE
2CL1Ligand/IonCHLORIDE ION
3MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:333 , GLN A:336 , GLN A:337 , TYR A:351 , THR A:354 , THR A:355 , PRO A:356 , VAL A:368 , LEU A:387 , LEU A:478 , PHE A:479 , MET A:488 , MET A:491 , ARG A:666 , LYS A:670 , MET A:673 , HIS A:825 , HOH A:1022binding site for residue 5WP A 901
2AC2SOFTWARELYS A:551binding site for residue CL A 902
3AC3SOFTWARETHR A:361 , TYR A:707 , GLU A:709binding site for residue MPD A 903

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FBU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FBU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FBU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FBU)

(-) Exons   (0, 0)

(no "Exon" information available for 5FBU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:733
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhh...........hhhhh.hhhhhhhhh..hhhhhhhhhhhhhh......hhhhhh.......hhhhhhhhhhhhhhhhhhhhhh..................eee...........eeee.eeee....eeeee..hhhhhhhhhhhhhhhh....eeeee...eeeeee................eeeehhhhh......hhhhhhhhhh.....eeee..eeeeehhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhh.....hhhhhh....hhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh......eee....ee.............ee.eeee..eeeeeeee..hhhhh.....eeeee...hhhhhhhh.....eee........hhhhhhhh...eee...hhhhhh....eeeee....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fbu A   2 KPYVLKFQEIRPGGKGMNLGACSNIEGVHVPAEAYKRTLEFTQLLQRLSSAIREISETIRTLIQHTQIPSEIASYMDATLLDVGKDALLQHISMCWASLFTERAIIHRKVQLAVVIQQMISPSGILFTADPITSNRKSLSIDDSYTVRENTITNKIIDQQIIQLAKLGRKIEAYFGKPQDIEWCFYIVQSRPITTLYPIPEVNEPGNRVYISVAHQQMMTDAMKPLGLSFYLMTTPATMYTAGGRLFVDITQSLSAKVSRDMMVNSLGQSDPLIKDALLTVINKKGFLPPLPTVRSIPDSSSVFELVRNSENSIKHLKQSIETKSGSDLFDFIVEDLEELKRVLFNPTSIDAIMAGMDASAWLNEHIYQWLGEKNVADKLSESAPNNITSQMGLELLDVADVIRPYPAVRAYLEQTKNPDFMNELATLEGGAETKKALEDYLQKYGMRCAGEIDLTKTRWIENPLTLIPLILSNIKNFDSSASMHKFAQGEKEAFHKEQEILRRLQELPDGEQKAMETKEKIDILRHFIGYREYPKYGMINRYFIYKLALLRAGEQLVKDGILQEHEDIYFLYFEELREVVRTGQVDYELINARKRDFATFEKLTPPRILTSDGEMINGEYKRENLPKDAILGLPVSSGTVEGRARVILEMEKADLEDGDILVTAYTDPSWTPAFVSIKGLVTEVGGLMTHGAVIAREYGLPAVVGVENATTIIKDGQQIRINGTEGYIEILD 867
                                    11 ||     27        37 ||     57        67|       84        94       104  ||   148       158     ||176       186 ||    198       208 ||    234      |275       285       295   ||  310       320       330       340       350       360       370       380       390       400       410  ||   434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864   
                                      13|                 39|    52|        67|                             107|                   164|            188|                210|           241|                       299|                                                                                                         413|                                                                                                                                                                                                                                                                                                                                                                                                                                                       
                                       20                  46     57         75                              142                    173             191                 227            273                        305                                                                                                          428
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FBU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FBU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FBU)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

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UniProtKB/TrEMBL
        A0A0X1KHF9_L | A0A0X1KHF9: 5fbt

(-) Related Entries Specified in the PDB File

5fbs 5fbt