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(-) Description

Title :  OXA-48 IN COMPLEX WITH FPI-1602
 
Authors :  A. M. King, D. T. King, S. French, E. Brouillette, A. Asli, A. N. Alexande M. Vuckovic, S. N. Maiti, T. R. Parr, E. D. Brown, F. Malouin, N. C. J. Str G. D. Wright
Date :  12 Dec 15  (Deposition) - 20 Jan 16  (Release) - 27 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.09
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. King, D. T. King, S. French, E. Brouillette, A. Asli, J. A. Alexander, M. Vuckovic, S. N. Maiti, T. R. Parr, E. D. Brown, F. Malouin, N. C. Strynadka, G. D. Wright
Structural And Kinetic Characterization Of Diazabicyclooctanes As Dual Inhibitors Of Both Serine-Beta-Lactamases And Penicillin-Binding Proteins.
Acs Chem. Biol. V. 11 864 2016
PubMed-ID: 26731698  |  Reference-DOI: 10.1021/ACSCHEMBIO.5B00944

(-) Compounds

Molecule 1 - BETA-LACTAMASE
    Chains: A, B
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: BLA OXA-48, BLAOXA-48, KPE71T_00045
    Organism Scientific: KLEBSIELLA PNEUMONIAE
    Organism Taxid: 573

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 13)

Asymmetric/Biological Unit (4, 13)
No.NameCountTypeFull Name
16022Ligand/Ion[[(3~{R},6~{S})-6-[(AZETIDIN-3-YLCARBONYLAMINO)CARBAMOYL]-1-METHANOYL-PIPERIDIN-3-YL]AMINO] HYDROGENSULFATE
2CD2Ligand/IonCADMIUM ION
3CL1Ligand/IonCHLORIDE ION
4CO8Ligand/IonCOBALT (II) ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:69 , SER A:70 , SER A:118 , VAL A:120 , LYS A:208 , THR A:209 , GLY A:210 , TYR A:211 , THR A:213 , ARG A:214 , ARG A:250 , HOH A:401 , HOH A:472 , HOH A:537binding site for residue 602 A 301
02AC2SOFTWAREARG A:206 , ARG B:206binding site for residue CL A 302
03AC3SOFTWAREASP A:143 , HOH A:415 , HOH A:432 , ASP B:143 , HOH B:428binding site for residue CD A 303
04AC4SOFTWAREHIS A:34 , GLU A:37 , GLU A:256 , CD A:305 , HOH A:449 , HOH A:539binding site for residue CO A 304
05AC5SOFTWAREGLU A:37 , HIS A:38 , GLU A:125 , GLU A:256 , CO A:304 , HOH A:449binding site for residue CD A 305
06AC6SOFTWAREHIS A:90 , HIS B:178binding site for residue CO A 306
07AC7SOFTWAREHIS B:34 , GLU B:256binding site for residue CO B 301
08AC8SOFTWAREHIS A:140 , CO B:303binding site for residue CO B 302
09AC9SOFTWAREHIS B:140 , CO B:302binding site for residue CO B 303
10AD1SOFTWAREHIS A:178 , HIS B:90binding site for residue CO B 304
11AD2SOFTWAREGLU A:147 , HIS B:140 , GLU B:147 , CO B:307binding site for residue CO B 306
12AD3SOFTWAREHIS A:140 , GLU A:147 , GLU B:147 , CO B:306binding site for residue CO B 307

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FAT)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Glu A:216 -Pro A:217
2Glu B:216 -Pro B:217

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FAT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FAT)

(-) Exons   (0, 0)

(no "Exon" information available for 5FAT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...hhhhhhh....eeeeeee....eeee.hhhhhh.ee.hhhhhhhhhhhhhhhh..................hhhhh...hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh...eehhhhhhhhhhhhh.....hhhhhhhhhhhheeee....eeeeeeeee......eeeeeeeeee..eeeeeeeeee..hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fat A  23 KEWQENKSWNAHFTEHKSQGVVVLWNENKQQGFTNNLKRANQAFLPASTFKIPNSLIALDLGVVKDEHQVFKWDGQTRDIATWNRDHNLITAMKYSVVPVYQEFARQIGEARMSKMLHAFDYGNEDISGNVDSFWLDGGIRISATEQISFLRKLYHNKLHVSERSQRIVKQAMLTEANGDYIIRAKTGYSTRIEPKIGWWVGWVELDDNVWFFAMNMDMPTSDGLGLRQAITKEVLKQEKIIP 265
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262   


Chain B from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...hhhhhhhh...eeeeeee....eeee.hhhhhhhee.hhhhhhhhhhhhhhhh..................hhhhh...hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh............hhhhhh...eehhhhhhhhhhhhh.....hhhhhhhhhhhheeee....eeeeeeeee......eeeeeeeee....eeeeeeeee..hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fat B  23 KEWQENKSWNAHFTEHKSQGVVVLWNENKQQGFTNNLKRANQAFLPASTFKIPNSLIALDLGVVKDEHQVFKWDGQTRDIATWNRDHNLITAMKYSVVPVYQEFARQIGEARMSKMLHAFDYGNEDISGNVDSFWLDGGIRISATEQISFLRKLYHNKLHVSERSQRIVKQAMLTEANGDYIIRAKTGYSTRIEPKIGWWVGWVELDDNVWFFAMNMDMPTSDGLGLRQAITKEVLKQEKIIP 265
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FAT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FAT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FAT)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu A:216 - Pro A:217   [ RasMol ]  
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  3.5.2.6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q6XEC0_KLEPN | Q6XEC0: 3hbr 4s2j 4s2k 4s2n 4s2p 4wmc 5dtk 5dts 5dtt 5dva 5faq 5fas 5hap 5haq

(-) Related Entries Specified in the PDB File

5fa7 5fao 5fap 5faq 5fas