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(-) Description

Title :  OXA-48 IN COMPLEX WITH FPI-1523
 
Authors :  A. M. King, D. T. King, S. French, E. Brouillette, A. Asli, A. N. Alexande M. Vuckovic, S. N. Maiti, T. R. Parr, E. D. Brown, F. Malouin, N. C. J. Str G. D. Wright
Date :  11 Dec 15  (Deposition) - 20 Jan 16  (Release) - 27 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.74
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. King, D. T. King, S. French, E. Brouillette, A. Asli, J. A. Alexander, M. Vuckovic, S. N. Maiti, T. R. Parr, E. D. Brown, F. Malouin, N. C. Strynadka, G. D. Wright
Structural And Kinetic Characterization Of Diazabicyclooctanes As Dual Inhibitors Of Both Serine-Beta-Lactamases And Penicillin-Binding Proteins.
Acs Chem. Biol. V. 11 864 2016
PubMed-ID: 26731698  |  Reference-DOI: 10.1021/ACSCHEMBIO.5B00944

(-) Compounds

Molecule 1 - BETA-LACTAMASE
    Chains: A, B
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: BLA OXA-48, BLAOXA-48, KPE71T_00045
    Organism Scientific: KLEBSIELLA PNEUMONIAE
    Organism Taxid: 573

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric/Biological Unit (4, 12)
No.NameCountTypeFull Name
15VR2Ligand/Ion[[(3~{R},6~{S})-6-(ACETAMIDOCARBAMOYL)-1-METHANOYL-PIPERIDIN-3-YL]AMINO] HYDROGEN SULFATE
2CD2Ligand/IonCADMIUM ION
3CL1Ligand/IonCHLORIDE ION
4CO7Ligand/IonCOBALT (II) ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:69 , SER A:70 , SER A:118 , VAL A:120 , LYS A:208 , THR A:209 , GLY A:210 , TYR A:211 , THR A:213 , ARG A:214 , ARG A:250 , HOH A:511 , HOH A:517binding site for residue 5VR A 301
02AC2SOFTWAREARG A:206 , ARG B:206binding site for residue CL A 302
03AC3SOFTWAREASP A:143 , HOH A:448 , HOH A:606 , ASP B:143 , HOH B:488binding site for residue CD A 303
04AC4SOFTWAREGLU A:37 , HIS A:38 , GLU A:125 , GLU A:256 , CO A:307 , HOH A:572binding site for residue CD A 304
05AC5SOFTWAREGLU A:147 , CO A:306 , HOH A:438 , HIS B:140 , GLU B:147 , HOH B:436binding site for residue CO A 305
06AC6SOFTWAREHIS A:140 , GLU A:147 , CO A:305 , HOH A:438 , GLU B:147 , HOH B:436binding site for residue CO A 306
07AC7SOFTWAREHIS A:34 , GLU A:37 , GLU A:256 , CD A:304 , HOH A:572 , HOH A:613binding site for residue CO A 307
08AC8SOFTWAREHIS B:140 , HOH B:527binding site for residue CO B 301
09AC9SOFTWAREHIS A:140 , HOH A:581 , HOH A:611binding site for residue CO B 302
10AD1SOFTWAREHIS B:34 , GLU B:37 , GLU B:256binding site for residue CO B 303
11AD2SOFTWAREHIS A:178 , HOH A:648 , HIS B:90binding site for residue CO B 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FAS)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Glu A:216 -Pro A:217
2Glu B:216 -Pro B:217

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FAS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FAS)

(-) Exons   (0, 0)

(no "Exon" information available for 5FAS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:242
                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...hhhhhhh....eeeeeee....eeee.hhhhhh.ee.hhhhhhhhhhhhhhhh..................hhhhh...hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh............hhhhhh...eehhhhhhhhhhhhh.....hhhhhhhhhhhheeee....eeeeeeeee......eeeeeeeee....eeeeeeeee..hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fas A  24 EWQENKSWNAHFTEHKSQGVVVLWNENKQQGFTNNLKRANQAFLPASTFKIPNSLIALDLGVVKDEHQVFKWDGQTRDIATWNRDHNLITAMKYSVVPVYQEFARQIGEARMSKMLHAFDYGNEDISGNVDSFWLDGGIRISATEQISFLRKLYHNKLHVSERSQRIVKQAMLTEANGDYIIRAKTGYSTRIEPKIGWWVGWVELDDNVWFFAMNMDMPTSDGLGLRQAITKEVLKQEKIIP 265
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263  


Chain B from PDB  Type:PROTEIN  Length:241
                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...hhhhhhhh...eeeeeee....eeee.hhhhhh.ee.hhhhhhhhhhhhhhhh..................hhhhh...hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh............hhhhhh...eehhhhhhhhhhhhh.....hhhhhhhhhhhheeee....eeeeeeeee......eeeeeeeee....eeeeeeeee..hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fas B  25 WQENKSWNAHFTEHKSQGVVVLWNENKQQGFTNNLKRANQAFLPASTFKIPNSLIALDLGVVKDEHQVFKWDGQTRDIATWNRDHNLITAMKYSVVPVYQEFARQIGEARMSKMLHAFDYGNEDISGNVDSFWLDGGIRISATEQISFLRKLYHNKLHVSERSQRIVKQAMLTEANGDYIIRAKTGYSTRIEPKIGWWVGWVELDDNVWFFAMNMDMPTSDGLGLRQAITKEVLKQEKIIP 265
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FAS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FAS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FAS)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  3.5.2.6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q6XEC0_KLEPN | Q6XEC0: 3hbr 4s2j 4s2k 4s2n 4s2p 4wmc 5dtk 5dts 5dtt 5dva 5faq 5fat 5hap 5haq

(-) Related Entries Specified in the PDB File

5fa7 5fao 5fap 5faq 5fat