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(-) Description

Title :  TRAP1N-ADPNP
 
Authors :  F. T. F. Tsai, S. Lee, N. Sung, J. Lee, C. Chang, A. Joachimiak
Date :  04 Dec 15  (Deposition) - 02 Mar 16  (Release) - 22 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (1x)
Keywords :  Chaperone, Atpase, Ghkl Atpase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Sung, J. Lee, J. H. Kim, C. Chang, A. Joachimiak, S. Lee, F. T. Tsai
Mitochondrial Hsp90 Is A Ligand-Activated Molecular Chaperone Coupling Atp Binding To Dimer Closure Through A Coiled-Coil Intermediate.
Proc. Natl. Acad. Sci. Usa V. 113 2952 2016
PubMed-ID: 26929380  |  Reference-DOI: 10.1073/PNAS.1516167113

(-) Compounds

Molecule 1 - HEAT SHOCK PROTEIN 75 KDA, MITOCHONDRIAL
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTYB12
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 60-294
    Gene: TRAP1, HSP75
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HSP 75,TNFR-ASSOCIATED PROTEIN 1,TUMOR NECROSIS FACTOR TYPE 1 RECEPTOR-ASSOCIATED PROTEIN,TRAP-1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:119 , ALA A:123 , LYS A:126 , ASP A:158 , MET A:163 , ASN A:171 , ARG A:177 , GLY A:204 , PHE A:205 , THR A:251 , MG A:301 , HOH A:422 , HOH A:424 , HOH A:429 , HOH A:430 , HOH A:431 , HOH A:433 , HOH A:442 , HOH A:443 , HOH A:447 , HOH A:455 , HOH A:458 , HOH A:468 , HOH A:471 , HOH A:474 , HOH A:478 , HOH A:492 , HOH A:498 , HOH A:523binding site for residue ANP A 300
2AC2SOFTWAREASN A:119 , ANP A:300 , HOH A:443 , HOH A:458binding site for residue MG A 301
3AC3SOFTWAREASN B:119 , ALA B:123 , LYS B:126 , ASP B:158 , MET B:163 , ASN B:171 , ARG B:177 , GLY B:204 , PHE B:205 , THR B:251 , MG B:301 , HOH B:427 , HOH B:431 , HOH B:440 , HOH B:442 , HOH B:444 , HOH B:449 , HOH B:453 , HOH B:462 , HOH B:469 , HOH B:483 , HOH B:485 , HOH B:496 , HOH B:513 , HOH B:522 , HOH B:533 , HOH B:552 , HOH B:554binding site for residue ANP B 300
4AC4SOFTWAREASN B:119 , ANP B:300 , HOH B:469 , HOH B:513binding site for residue MG B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F5R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5F5R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F5R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F5R)

(-) Exons   (0, 0)

(no "Exon" information available for 5F5R)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeeeeee.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.............eeeeee....eeeeee.....hhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.eeeeeeeee.......eeeeee....eeeeeeee....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh...eee..ee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f5r A  70 PLHSIISSTESVQGSTSKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSDGQALPEMEIHLQTNAEKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLDALQNQAEASSKIIGQFGVGFYSAFMVADRVEVYSRSAAPGSLGYQWLSDGSGVFEIAEASGVRTGTKIIIHLKSDCKEFSSEARVRDVVTKYSNFVSFPLYLNGRRMNT 294
                                    79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289     


Chain B from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeeeeeeeee.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh..........eeeeee....eeeeee.....hhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.eeeeeeeee.......eeeeee....eeeeeeee....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh...eee..ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5f5r B  70 PLHSIISSTESVQGSTSKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSALPEMEIHLQTNAEKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLDALQNQAEASSKIIGQFGVGFYSAFMVADRVEVYSRSAAPGSLGYQWLSDGSGVFEIAEASGVRTGTKIIIHLKSDCKEFSSEARVRDVVTKYSNFVSFPLYLNGRRMNT 294
                                    79        89        99       109       119       129   ||  142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292  
                                                                                         133|                                                                                                                                                             
                                                                                          137
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F5R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F5R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F5R)

(-) Gene Ontology  (22, 22)

Asymmetric Unit(hide GO term definitions)

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  TRAP1_HUMAN | Q12931
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRAP1_HUMAN | Q12931: 4z1f 4z1g 4z1h 4z1i 5f3k 5hph

(-) Related Entries Specified in the PDB File

5f3k 5F3K CONTAINS THE SAME PROTEIN WITHOUT LIGAND BINDING