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(-) Description

Title :  APO PROTEIN OF SANDERCYANIN
 
Authors :  S. Ghosh, S. Ramaswamy
Date :  30 Nov 15  (Deposition) - 28 Sep 16  (Release) - 26 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Sandercyanin, Red-Fluorescent Protein, Lipocalin, Biliverdin, Photo- Stability, Fluorescent Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Ghosh, C. L. Yu, D. J. Ferraro, S. Sudha, S. K. Pal, W. F. Schaefer, D. T. Gibson, S. Ramaswamy
Blue Protein With Red Fluorescence
Proc. Natl. Acad. Sci. Usa V. 113 11513 2016
PubMed-ID: 27688756  |  Reference-DOI: 10.1073/PNAS.1525622113

(-) Compounds

Molecule 1 - SANDERCYANIN FLUORESCENT PROTEIN
    Cell Line: MUCOSA
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET21A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: SANDER VITREUS
    Organism Taxid: 283036
    Tissue: MUCUS

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5F1E)

(-) Sites  (0, 0)

(no "Site" information available for 5F1E)

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:27 -A:132
2A:60 -A:184
3B:27 -B:132
4B:60 -B:184

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5F1E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F1E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F1E)

(-) Exons   (0, 0)

(no "Exon" information available for 5F1E)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:163
                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee............hhhhhheeeeeeee....eeeeeeeee.....eeeeeeee.....eeeeeeeee........eeeeee.....eeeeeeee....eeeeeeeeee..eeeeeeeeee.....hhhhhhhhhhhhhhh..hhhhhee.......hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f1e A  22 IKPGRCPKPAVQEDFDAARYLGVWYDIQRLPNGECATATYSLSPGVGFSVFNRERLANGTIKSVIGSAIAEDPCEPAKLQFFHENAAPVPYWVLSTDYDNYALVYSCINLGASHAAYASIVSRQPTLPEETIKKLQGTMSSFGVGVDTLLTTNQDAAYCSAMN 188
                                    31        41        51 ||     65        75        85        95       105       115       125       135       145       155       165       175       185   
                                                          53|                                                                                                                                  
                                                           58                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee............hhhhhheeeeeeee....eeeeeeeee.....eeeeeeee.....eeeeeeeee........eeeeee.....eeeeeeee....eeeeeeeeee..eeeeeeeeee.....hhhhhhhhhhhhhh...hhhhhee.......hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f1e B  21 FIKPGRCPKPAVQEDFDAARYLGVWYDIQRLPNGECATATYSLSPGVGFSVFNRERLANGTIKSVIGSAIAEDPCEPAKLQFFHENAAPVPYWVLSTDYDNYALVYSCINLGASHAAYASIVSRQPTLPEETIKKLQGTMSSFGVGVDTLLTTNQDAAYCSAMN 188
                                    30        40        50  ||    64        74        84        94       104       114       124       134       144       154       164       174       184    
                                                           53|                                                                                                                                  
                                                            58
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F1E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F1E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F1E)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5F1E)

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  5f1e
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  A0A1D5B367_S | A0A1D5B367
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A1D5B367_S | A0A1D5B367: 5ez2

(-) Related Entries Specified in the PDB File

5ez2 5f6z