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(-) Description

Title :  CRYSTAL STRUCTURE OF AMB A 8 IN COMPLEX WITH POLY-PRO10
 
Authors :  L. R. Offermann, C. R. Schlachter, J. Garrett, M. Chruszcz
Date :  19 Nov 15  (Deposition) - 08 Jun 16  (Release) - 10 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Allergen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. R. Offermann, C. R. Schlachter, M. L. Perdue, K. A. Majorek, J. Z. He, W. T. Booth, J. Garrett, K. Kowal, M. Chruszcz
Structural, Functional, And Immunological Characterization Of Profilin Panallergens Amb A 8, Art V 4, And Bet V 2.
J. Biol. Chem. V. 291 15447 2016
PubMed-ID: 27231348  |  Reference-DOI: 10.1074/JBC.M116.733659

(-) Compounds

Molecule 1 - PROFILIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PJEXPRESS411
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Common: SHORT RAGWEED
    Organism Scientific: AMBROSIA ARTEMISIIFOLIA
    Organism Taxid: 4212
 
Molecule 2 - POLY-PROLINE PEPTIDE
    Chains: B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5EVE)

(-) Sites  (0, 0)

(no "Site" information available for 5EVE)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:95 -A:117

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:110 -Pro A:111

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EVE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EVE)

(-) Exons   (0, 0)

(no "Exon" information available for 5EVE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhh............eeeeee....eeee.......hhhhhhhhhhhhhh........eee..eeeeee......eeeeee..eeeeeee...eeeeeee....hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5eve A   2 SWQTYVDEHLMCDIEGTGQHLASAAIFGTDGNVWAKSSSFPEFKPDEINAIIKEFSEPGALAPTGLFLAGAKYMVIQGEPGAVIRGKKGAGGICIKKTGQAMVFGIYEEPVNPGQCNMVVERLGDYLVDQGM 133
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  


Chain B from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 5eve B   1 PPPPPPPPPP  10
                                    10
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EVE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EVE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EVE)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu A:110 - Pro A:111   [ RasMol ]  
 

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  Q2KN24_AMBAR | Q2KN24
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q2KN24_AMBAR | Q2KN24: 5em1 5ev0

(-) Related Entries Specified in the PDB File

5em0 5em1 5ev0