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(-) Description

Title :  CRYSTAL STRUCTURE OF RAGWEED ALLERGEN AMB A 8
 
Authors :  L. R. Offermann, J. Z. He, M. L. Perdue, M. Chruszcz
Date :  05 Nov 15  (Deposition) - 08 Jun 16  (Release) - 10 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  A
Keywords :  Allergen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. R. Offermann, C. R. Schlachter, M. L. Perdue, K. A. Majorek, J. Z. He, W. T. Booth, J. Garrett, K. Kowal, M. Chruszcz
Structural, Functional, And Immunological Characterization Of Profilin Panallergens Amb A 8, Art V 4, And Bet V 2.
J. Biol. Chem. V. 291 15447 2016
PubMed-ID: 27231348  |  Reference-DOI: 10.1074/JBC.M116.733659

(-) Compounds

Molecule 1 - PROFILIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PJ411
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Common: SHORT RAGWEED
    Organism Scientific: AMBROSIA ARTEMISIIFOLIA
    Organism Taxid: 4212

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 10)

Asymmetric/Biological Unit (4, 10)
No.NameCountTypeFull Name
1BEZ1Ligand/IonBENZOIC ACID
2CL1Ligand/IonCHLORIDE ION
3CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
4MLY7Mod. Amino AcidN-DIMETHYL-LYSINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:-1 , GLY A:-2 , THR A:5 , TYR A:6 , PRO A:46 , ASP A:47 , HOH A:322 , HOH A:329binding site for residue BEZ A 201
2AC2SOFTWAREASP A:31 , ASN A:33 , TRP A:35 , PRO A:114 , HOH A:327binding site for residue CL A 202

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:95 -A:117

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:110 -Pro A:111

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EM1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EM1)

(-) Exons   (0, 0)

(no "Exon" information available for 5EM1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhh..............eeeeee....eeee.......hhhhhhhhhhhhhh........eee..eeeeeeeee...eeeeee..eeeeeee...eeeeeeee...hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5em1 A  -2 GSGSWQTYVDEHLMcDIEGTGQHLASAAIFGTDGNVWAkSSSFPEFkPDEINAIIKEFSEPGALAPTGLFLAGAkYMVIQGEPGAVIRGkkGAGGICIkkTGQAMVFGIYEEPVNPGQCNMVVERLGDYLVDQGM 133
                              ||     8    |   18        28        38      | 48        58        68    |   78        88|       98       108       118       128     
                              0|         13-CME                  37-MLY  45-MLY                      73-MLY         88-MLY   97-MLY                                
                               2                                                                                     89-MLY   98-MLY
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EM1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EM1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EM1)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  5em1
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  Q2KN24_AMBAR | Q2KN24
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q2KN24_AMBAR | Q2KN24: 5ev0 5eve

(-) Related Entries Specified in the PDB File

5em0 5EM0 BELONGS TO THE SAME FAMILY: PROFILIN