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(-) Description

Title :  CRYSTAL STRUCTURE OF RAGWEED PROFILIN AMB A 8 IN COMPLEX WITH POLY-PRO14
 
Authors :  L. R. Offermann, J. Z. He, M. L. Perdue, M. Chruszcz
Date :  19 Nov 15  (Deposition) - 08 Jun 16  (Release) - 03 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Allergen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. R. Offermann, C. R. Schlachter, M. L. Perdue, K. A. Majorek, J. Z. He, W. T. Booth, J. Garrett, K. Kowal, M. Chruszcz
Structural, Functional, And Immunological Characterization Of Profilin Panallergens Amb A 8, Art V 4, And Bet V 2.
J. Biol. Chem. V. 291 15447 2016
PubMed-ID: 27231348  |  Reference-DOI: 10.1074/JBC.M116.733659

(-) Compounds

Molecule 1 - PROFILIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PJEXPRESS411
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Common: SHORT RAGWEED
    Organism Scientific: AMBROSIA ARTEMISIIFOLIA
    Organism Taxid: 4212
 
Molecule 2 - PRO-PRO-PRO-PRO-PRO-PRO-PRO-PRO-PRO
    Chains: C, D
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1CME2Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE

(-) Sites  (0, 0)

(no "Site" information available for 5EV0)

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:95 -A:117
2B:95 -B:117

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Glu A:110 -Pro A:111
2Glu B:110 -Pro B:111
3Pro D:8 -Pro D:9

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EV0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EV0)

(-) Exons   (0, 0)

(no "Exon" information available for 5EV0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh..hhhhh.....eeeeee....eeee.......hhhhhhhhhhhhhh........eee..eeeee.......eeeeee..eeeeeee...eeeeeee....hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ev0 A  -1 SGSWQTYVDEHLMcDIEGTGQHLASAAIFGTDGNVWAKSSSFPEFKPDEINAIIKEFSEPGALAPTGLFLAGAKYMVIQGEPGAVIRGKKGAGGICIKKTGQAMVFGIYEEPVNPGQCNMVVERLGDYLVDQGM 133
                             ||      9   |    19        29        39        49        59        69        79        89        99       109       119       129    
                             0|         13-CME                                                                                                                    
                              2                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh..hhhhh.....eeeeee....eeee.......hhhhhhhhhhhhhh........eee..eeeee.......eeeeee..eeeeeee...eeeeeee....hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ev0 B   0 GSWQTYVDEHLMcDIEGTGQHLASAAIFGTDGNVWAKSSSFPEFKPDEINAIIKEFSEPGALAPTGLFLAGAKYMVIQGEPGAVIRGKKGAGGICIKKTGQAMVFGIYEEPVNPGQCNMVVERLGDYLVDQGM 133
                            ||      10  |     20        30        40        50        60        70        80        90       100       110       120       130   
                            0|         13-CME                                                                                                                    
                             2                                                                                                                                   


Chain C from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 5ev0 C   1 PPPPPPPPP   9


Chain D from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 5ev0 D   1 PPPPPPPPP   9
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EV0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EV0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EV0)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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