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(-) Description

Title :  HU DNA-BINDING PROTEIN FROM THERMUS THERMOPHILUS
 
Authors :  A. Papageorgiou, P. Adam, P. Stavros, G. Nounesis, R. Meijers, K. Petra C. E. Vorgias
Date :  03 Nov 15  (Deposition) - 06 Jul 16  (Release) - 14 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.69
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Hu Protein, Histone-Like Protein, Thermostable Dna-Binding Protein, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. C. Papageorgiou, P. S. Adam, P. Stavros, G. Nounesis, R. Meijers, K. Petratos, C. E. Vorgias
Hu Histone-Like Dna-Binding Protein From Thermus Thermophilus: Structural And Evolutionary Analyses.
Extremophiles V. 20 695 2016
PubMed-ID: 27342116  |  Reference-DOI: 10.1007/S00792-016-0859-1

(-) Compounds

Molecule 1 - DNA-BINDING PROTEIN HU
    Atcc: 27634
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: TTHA1349
    Organism Scientific: THERMUS THERMOPHILUS HB8
    Organism Taxid: 300852
    Other Details: DNA-BINDING PROTEIN HU FROM THERMUS THERMOPHILUS. UNIPROTKB CODE: DBH_THET8
    Synonym: DNA-BINDING PROTEIN II,TL29

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:15 , MET A:29 , VAL A:30 , LEU A:33binding site for residue GOL A 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EKA)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:85
                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh...eee...eeeeeeee.......eeeeeeeehhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                  5eka A  1 AAKKTVTKADLVDQVAQATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKARTIPATQYPAFKPGKALKDKVKK 96
                                    10        20        30        40        50        60   ||   81        91     
                                                                                          64|                    
                                                                                           76
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 Classification and Annotation

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(-) Gene Ontology  (2, 2)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1b8z DNA-BINDING PROTEIN HU FROM HERMOTOGA MARITIMA
1huu DNA-BINDING PROTEIN HU FROM BACILLUS STEAROTHERMOPHILUS
1p71 DNA BINDING ANABAENA HU-DNA CORCRYSTAL STRUCTURE (TR3)