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(-) Description

Title :  PRE-TRANSLOCATION STATE OF BACTERIAL CELLULOSE SYNTHASE
 
Authors :  J. L. W. Moragn, J. Zimmer
Date :  30 Oct 15  (Deposition) - 30 Mar 16  (Release) - 30 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.40
Chains :  Asym./Biol. Unit :  A,B,D
Keywords :  Cellulose Biosynthesis, Glycosyltransferase, Membrane Transport, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. L. Morgan, J. T. Mcnamara, M. Fischer, J. Rich, H. M. Chen, S. G. Withers, J. Zimmer
Observing Cellulose Biosynthesis And Membrane Translocation In Crystallo.
Nature V. 531 329 2016
PubMed-ID: 26958837  |  Reference-DOI: 10.1038/NATURE16966

(-) Compounds

Molecule 1 - PUTATIVE CELLULOSE SYNTHASE
    Chains: A
    EC Number: 2.4.1.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 13-740
    Gene: RSP_0333
    Organism Scientific: RHODOBACTER SPHAEROIDES (STRAIN ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
    Organism Taxid: 272943
    Strain: ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158
 
Molecule 2 - PUTATIVE CELLULOSE SYNTHASE
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 52-720
    Gene: RSP_0332
    Organism Scientific: RHODOBACTER SPHAEROIDES (STRAIN ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
    Organism Taxid: 272943
    Strain: ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158
 
Molecule 3 - POLY(UNK)
    Chains: D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: RHODOBACTER SPHAEROIDES
    Organism Taxid: 1063

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 31)

Asymmetric/Biological Unit (5, 31)
No.NameCountTypeFull Name
13PE2Ligand/Ion1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
2BGC18Ligand/IonBETA-D-GLUCOSE
3C2E2Ligand/Ion9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10,12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3,2-D:3',2'-J][1,3,7,9,2,8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO-1,9-DIHYDRO-6H-PURIN-6-ONE)
4UNK7Mod. Amino Acid
5XP52Ligand/Ion(4S,7R)-7-(HEPTANOYLOXY)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEXADECAN-1-AMINIUM 4-OXIDE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:579 , ARG A:580 , ALA A:581 , ARG A:584 , ASP A:609 , ALA A:610 , SER A:611 , SER A:613 , GLY A:614 , VAL A:615 , ARG A:616 , ARG A:658 , GLY A:670 , VAL A:671 , ILE A:672 , C2E A:920binding site for residue C2E A 919
2AC2SOFTWAREGLN A:578 , ARG A:579 , ARG A:580 , ARG A:584 , ARG A:616 , ARG A:658 , C2E A:919binding site for residue C2E A 920
3AC3SOFTWAREPHE A:435 , ARG A:541 , PHE A:545 , ASP A:548 , BGC A:906binding site for residue XP5 A 921
4AC4SOFTWARELYS A:57 , GLY A:708 , LEU A:709 , LEU A:710 , HIS A:711binding site for residue 3PE A 922
5AC5SOFTWARETRP A:718binding site for residue 3PE A 923
6AC6SOFTWAREASP B:680 , ARG B:683binding site for residue XP5 B 801
7AC7SOFTWARETYR A:80 , GLU A:108 , SER A:111 , ILE A:114 , PHE A:115 , ASN A:118 , LYS A:226 , ASP A:246 , GLU A:297 , MET A:300 , PHE A:301 , TYR A:302 , ILE A:305 , CYS A:318 , GLY A:319 , SER A:320 , THR A:341 , ASP A:343 , TRP A:383 , MET A:387 , ASN A:412 , SER A:413 , PHE A:416 , TRP A:417 , ARG A:423 , PHE A:426 , ALA A:429 , PRO A:430 , TYR A:433 , GLY A:437 , ILE A:438 , GLU A:439 , ILE A:440 , PHE A:441 , ALA A:443 , MET A:452 , TYR A:455 , SER A:459 , GLN A:463 , ARG A:471 , SER A:476 , GLU A:477 , GLU A:480 , GLY A:547 , ASP A:548 , VAL A:551 , VAL A:554 , VAL A:555 , TRP A:558 , XP5 A:921 , ARG B:384 , MET B:385 , PRO B:387 , ARG B:390 , VAL B:566 , GLU B:567 , SER B:568binding site for Poly-Saccharide residues BGC A 901 through BGC A 918
8AC8SOFTWARETYR A:80 , GLU A:108 , SER A:111 , ILE A:114 , PHE A:115 , ASN A:118 , TYR A:168 , PRO A:169 , LEU A:172 , ARG A:173 , LYS A:226 , ASP A:246 , GLU A:297 , MET A:300 , PHE A:301 , TYR A:302 , ILE A:305 , CYS A:318 , GLY A:319 , SER A:320 , THR A:341 , ASP A:343 , TRP A:383 , MET A:387 , ASN A:412 , SER A:413 , PHE A:416 , TRP A:417 , ARG A:423 , PHE A:426 , ALA A:429 , PRO A:430 , TYR A:433 , GLY A:437 , ILE A:438 , GLU A:439 , ILE A:440 , PHE A:441 , ALA A:443 , MET A:452 , TYR A:455 , SER A:459 , GLN A:463 , ARG A:471 , SER A:476 , GLU A:477 , GLU A:480 , GLY A:547 , ASP A:548 , VAL A:551 , VAL A:554 , VAL A:555 , TRP A:558 , BGC A:901 , XP5 A:921 , ARG B:384 , MET B:385 , PRO B:387 , ARG B:390 , VAL B:566 , GLU B:567 , SER B:568binding site for residues UNK D 170 and UNK D 171

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1B:163 -B:430

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Asp A:626 -Pro A:627
2Gly B:141 -Glu B:142
3Gly B:252 -Pro B:253
4Asn B:424 -Pro B:425

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EJ1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EJ1)

(-) Exons   (0, 0)

(no "Exon" information available for 5EJ1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:721
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh...................eeeeeee...hhhhhhhhhhhhhh...hhh.eeeeeee.....hhhhh.hhhhhhhhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhhhh...eeee.....ee..hhhhhhhhhhhhh....eee....eee.hhhhhh........hhhhhhhhhhhhhhhhhh........eeeehhhhhh..........hhhhhhhhhhh............eeee...hhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh...........ee..hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...ee.........eeeeeeeeee........eeeeeeee...eeeeeee..............eeeeeee...........eeeee...eee..eeeeeeee.....hhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ej1 A  13 VVPVLLFLLWVALLVPFGLLAAAPVAPSAQGLIALSAVVLVALLKPFADKMVPRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPLQPEELPTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVVYSTRERNEHAKAGNMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALDEAGGFAGETITEDAETALEIHSRGWKSLYIDRAMIAGLQPETFASFIQQRGRWATGMMQMLLLKNPLFRRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLAYMPGYLAVSFLVQNALFARQRWPLVSEVYEVAQAPYLARAIVTTLLRPRSARFTLSENYISPIYRPLLFTFLLCLSGVLATLVRWVAFPGDRSVLLVVGGWAVLNVLLVGFALRAVAEKQQRRAAPRVQMEVPAEAQIPAFGNRSLTATVLDASTSGVRLLVRLPGVGDPHPALEAGGLIQFQPKFPDAPQLERMVRGRIRSARREGGTVMVGVIFEAGQPIAVRETVAYLIFGESAHWRTMREATMRPIGLLHGMARILWMAAASLPKTARDFMDEPARRRR 740
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502||     519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    503|                                                                                                                                                                                                                                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     511                                                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:657
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..ee.........eeeee...eeeeeeeeehhhhh..eeeeeeee.........eeeeee...eeeee........eeeeee.......eeeeeeeeee...............eeeeeeeeeeeee.......hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhh........eeee...........eeeeeee....eeeeee.....eeeeeee.......hhhhhhhhhh.................ee.hhhh...eee...eeeeeeee............eeeeeeeeee........eeeeee..eeeeeee........eeeeeeeee........eeeeeeee.................eee....eee......ee..hhhhhhh......eee....hhhhhhhhhh...........eeeeee..hhhhh.......hhhhhhhhhh............................hhhhhhhhhhhhhhhhhhh.hhhhhh.....hhhhhhh....eeeeeee..eeeeee....hhhhhhhhhhhhhhh.......eeee.....eeee.......ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ej1 B  52 VAPWIIPLRPLAETAQVGPLFRLQGQQARAAFRLFLPTEAVGGTLTLAQRSSIDILPESSQIIVRMNDQEIGRFTPRQFGALGAVTMPLGEAVRAGDNLVTIEAQHRHRIYCGADAEFDLWTEVDLSQSGVALPAAAIGTEPTSFIAALTAQAESGRPVEIRTPTPPDEATLRTLAQALGRPLPDEALPLALSKPWSAETGPTYARITLLPSDADRVSIRRGGDGAVVLVLEHPPEGSPNASLVADLLGATPTLPPPTLPQIPPGRVVTLADMGVDTILTDNRYFNRDIDFQLPDDWLLLASQKAQIGIDYGFAGGLPEGALLLVKVNGTTVRMLPLDRDAAPVKPRLDIRFPARLLHPGPNRLSFESVIPGNPPDQPCPASAGDLMQVLSSTDLEVPPSPRMQMADMARDLAQVTPASVHPATPDGLARTLPFMAAFREVPDAAPVDLTVAGLHDIATVPLNEEGLTPRLLALTLLPSTGPPANALAPLGAAPGEGVMPPLVESNWSDRAQTFVQATLQPVIQTVRRMLRPGDGNLAEWLATRKGTAMLLAPEPGKLWVILGPEAEPARVAEALAMAPRSPGGPRGQVAVLGSDGRWSSWSKPGLLPELREPVSLDNVRSVVGNVASARPPLLLGGMLGLAWISAAIAVGFVLRTR 720
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531|      553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         531|                                                                                                                                                                                
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          544                                                                                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 5ej1 D 170 xxxxxxx 177
                            |||||||
                          170-UNK||
                           171-UNK|
                            172-UNK
                             173-UNK
                              175-UNK
                               176-UNK
                                177-UNK
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EJ1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EJ1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EJ1)

(-) Gene Ontology  (11, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q3J125_RHOS4 | Q3J125: 4hg6 4p00 4p02 5eiy 5ejz
        Q3J126_RHOS4 | Q3J126: 4hg6 4p00 4p02 5eiy 5ejz

(-) Related Entries Specified in the PDB File

5eiy