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(-) Description

Title :  BACTERIAL CELLULOSE SYNTHASE IN COMPLEX WITH CYCLIC-DI-GMP AND UDP
 
Authors :  J. L. W. Morgan, J. T. Mcnamara, J. Zimmer
Date :  19 Feb 14  (Deposition) - 09 Apr 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B,D
Keywords :  Membrane Protein, Cellulose Biosynthesis, Biofilm, Cyclic-Di-Gmp, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. L. Morgan, J. T. Mcnamara, J. Zimmer
Mechanism Of Activation Of Bacterial Cellulose Synthase By Cyclic Di-Gmp.
Nat. Struct. Mol. Biol. V. 21 489 2014
PubMed-ID: 24704788  |  Reference-DOI: 10.1038/NSMB.2803

(-) Compounds

Molecule 1 - CELLULOSE SYNTHASE A SUBUNIT
    Chains: A
    EC Number: 2.4.1.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RSP_0333
    Organism Scientific: RHODOBACTER SPHAEROIDES
    Organism Taxid: 272943
    Strain: 2.4.1
 
Molecule 2 - CELLULOSE SYNTHASE B SUBUNIT
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RSP_0332
    Organism Scientific: RHODOBACTER SPHAEROIDES
    Organism Taxid: 272943
    Strain: 2.4.1
 
Molecule 3 - UNIDENTIFIED PEPTIDE
    Chains: D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: RHODOBACTER SPHAEROIDES
    Organism Taxid: 272943
    Strain: 2.4.1

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 32)

Asymmetric/Biological Unit (7, 32)
No.NameCountTypeFull Name
13PE1Ligand/Ion1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
2BGC17Ligand/IonBETA-D-GLUCOSE
3C2E2Ligand/Ion9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10,12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3,2-D:3',2'-J][1,3,7,9,2,8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO-1,9-DIHYDRO-6H-PURIN-6-ONE)
4MG1Ligand/IonMAGNESIUM ION
5PLC1Ligand/IonDIUNDECYL PHOSPHATIDYL CHOLINE
6UDP1Ligand/IonURIDINE-5'-DIPHOSPHATE
7UNK9Mod. Amino Acid

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:147 , SER A:148 , TYR A:149 , GLU A:151 , ASP A:180 , ALA A:225 , LYS A:226 , ASP A:246 , ALA A:247 , GLN A:379 , ARG A:382 , TRP A:383 , PHE A:503 , VAL A:505 , THR A:506 , LYS A:508 , MG A:921binding site for residue UDP A 918
2AC2SOFTWAREARG A:579 , ARG A:580 , ALA A:581 , ARG A:584 , ASP A:609 , SER A:611 , SER A:613 , GLY A:614 , VAL A:615 , ARG A:616 , ARG A:658 , GLY A:670 , VAL A:671 , ILE A:672 , C2E A:920binding site for residue C2E A 919
3AC3SOFTWAREGLN A:578 , ARG A:579 , ARG A:580 , ARG A:584 , ARG A:616 , ARG A:658 , SER A:659 , C2E A:919binding site for residue C2E A 920
4AC4SOFTWAREHIS A:249 , UDP A:918binding site for residue MG A 921
5AC5SOFTWAREPHE A:435 , GLY A:437 , ARG A:541 , PHE A:545 , ASP A:548 , BGC A:906binding site for residue PLC A 922
6AC6SOFTWAREALA A:54 , LYS A:57 , LEU A:709 , LEU A:710binding site for residue 3PE A 923
7AC7SOFTWARETYR A:80 , GLU A:108 , SER A:111 , ILE A:114 , PHE A:115 , ASN A:118 , MET A:300 , TYR A:302 , ILE A:305 , CYS A:318 , THR A:341 , ASP A:343 , TRP A:383 , MET A:387 , ASN A:412 , SER A:413 , PHE A:416 , TRP A:417 , ARG A:423 , PHE A:426 , ALA A:429 , PRO A:430 , TYR A:433 , GLY A:437 , ILE A:438 , GLU A:439 , PHE A:441 , ALA A:443 , MET A:452 , TYR A:455 , LEU A:456 , ARG A:471 , SER A:476 , GLU A:477 , GLU A:480 , GLY A:547 , ASP A:548 , VAL A:551 , VAL A:554 , TRP A:558 , PLC A:922 , ARG B:384 , MET B:385 , LEU B:386 , ARG B:390 , LEU B:399 , VAL B:566 , GLU B:567 , SER B:568binding site for Poly-Saccharide residues BGC A 901 through BGC A 917

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1B:163 -B:430

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Asp A:626 -Pro A:627
2Gly B:141 -Glu B:142
3Gly B:252 -Pro B:253
4Asn B:424 -Pro B:425

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4P00)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4P00)

(-) Exons   (0, 0)

(no "Exon" information available for 4P00)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:728
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh...................eeeeeee...hhhhhhhhhhhhhh.......eeeeeee...........hhhhhhhhhhhhhhhhhhhhhhh.eee......hhhhhhhhhhhhhh...eeee..........hhhhhhhhh.....eeeee........hhhhhhh.........hhhhhhhhhhhhhh..........eeeehhhhhh.........hhhhhhhhhhhh...eeee............hhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.................eee...hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...eee........eeeeeeeeeehhhhh...eeeeeeee...eeeeeee...............eeeeee....hhhhh..eeeeeeeeeee..eeeeeeee.....hhhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p00 A  13 VVPVLLFLLWVALLVPFGLLAAAPVAPSAQGLIALSAVVLVALLKPFADKMVPRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPLQPEELPTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVVYSTRERNEHAKAGNMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALDEAGGFAGETITEDAETALEIHSRGWKSLYIDRAMIAGLQPETFASFIQQRGRWATGMMQMLLLKNPLFRRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLAYMPGYLAVSFLVQNALFARQRWPLVSEVYEVAQAPYLARAIVTTLLRPRSARFAVTAKDETLSENYISPIYRPLLFTFLLCLSGVLATLVRWVAFPGDRSVLLVVGGWAVLNVLLVGFALRAVAEKQQRRAAPRVQMEVPAEAQIPAFGNRSLTATVLDASTSGVRLLVRLPGVGDPHPALEAGGLIQFQPKFPDAPQLERMVRGRIRSARREGGTVMVGVIFEAGQPIAVRETVAYLIFGESAHWRTMREATMRPIGLLHGMARILWMAAASLPKTARDFMDEPARRRR 740
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732        


Chain B from PDB  Type:PROTEIN  Length:655
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..ee.........eeeee...eeeeeeeeehhhhh..eeeeeeee.........eeeeee...eeeee........eeeeee.......eeeeeeeeee.......hhhhhh..eeeee....eeee.......hhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhh........eeee...........eeeeeee....eeeeee.....eeeeeee......hhhhhhhhhhh.................ee........eee...eeeeeeeee...........eeeeee.eee........eeeeee..eeeeeee...........eeeeee.hhh...eeeeeeeee.................eee....eee......ee..hhhhhhhhhhhh.eee.hhhhh..hhhhhh...........eeeeee.hhh..........hhhhhhhhhh............................hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh.....eeeeeee..eeeeee....hhhhhhhhhhhhhhh.......eeee.....eeee.......ee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p00 B  54 PWIIPLRPLAETAQVGPLFRLQGQQARAAFRLFLPTEAVGGTLTLAQRSSIDILPESSQIIVRMNDQEIGRFTPRQFGALGAVTMPLGEAVRAGDNLVTIEAQHRHRIYCGADAEFDLWTEVDLSQSGVALPAAAIGTEPTSFIAALTAQAESGRPVEIRTPTPPDEATLRTLAQALGRPLPDEALPLALSKPWSAETGPTYARITLLPSDADRVSIRRGGDGAVVLVLEHPPEGSPNASLVADLLGATPTLPPPTLPQIPPGRVVTLADMGVDTILTDNRYFNRDIDFQLPDDWLLLASQKAQIGIDYGFAGGLPEGALLLVKVNGTTVRMLPLDRDAAPVKPRLDIRFPARLLHPGPNRLSFESVIPGNPPDQPCPASAGDLMQVLSSTDLEVPPSPRMQMADMARDLAQVTPASVHPATPDGLARTLPFMAAFREVPDAAPVDLTVAGLHDIATVPLNEEGLTPRLLALTLLPSTGPPANALAPLGAAPGEGVMPPLVESNWSDRAQTFVQATLQPVIQTVRRMLRPGDGNLAEWLATRKGTAMLLAPEPGKLWVILGPEAEPARVAEALAMAPRSPGGPRGQVAVLGSDGRWSSWSKPGLLPELREPVSLDNVRSVVGNVASARPPLLLGGMLGLAWISAAIAVGFVLRTR 720
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       531|                                                                                                                                                                                
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        544                                                                                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 4p00 D 169 xxxxxxxxx 177
                            |||||||||
                          169-UNK||||
                           170-UNK|||
                            171-UNK||
                             172-UNK|
                              173-UNK
                               174-UNK
                                175-UNK
                                 176-UNK
                                  177-UNK
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4P00)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4P00)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4P00)

(-) Gene Ontology  (11, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q3J125_RHOS4 | Q3J125: 4hg6 4p02 5eiy 5ej1 5ejz
        Q3J126_RHOS4 | Q3J126: 4hg6 4p02 5eiy 5ej1 5ejz

(-) Related Entries Specified in the PDB File

4hg6 4p02