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(-) Description

Title :  APO-STRUCTURE OF YTH DOMAIN OF SPMMI1
 
Authors :  B. X. Wu, J. H. Xu, S. C. Su, J. B. Ma
Date :  30 Oct 15  (Deposition) - 27 Jan 16  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.49
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Yth, Mmi1, Dsr, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. X. Wu, J. H. Xu, S. C. Su, J. B. Ma
Crystal Structure Of Yth Domain Of Spmmi1-Dsr Complex
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - YTH DOMAIN-CONTAINING PROTEIN MMI1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 349-477
    Gene: MMI1, SPCC736.12C
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE 972H-
    Organism Taxid: 284812
    Strain: 972H-
    Synonym: YTH DOMAIN OF SPMMI1, MEIOTIC MRNA INTERCEPTION PROTEIN 1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5EIP)

(-) Sites  (0, 0)

(no "Site" information available for 5EIP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EIP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5EIP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeee.hhhhhhhhhhhheeeeehhhhhhhhhhhhhh.eeeeeee.....eeeeeee................eeeeeeeeeeeeeee.hhhhhhhhhh...........eehhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eip A 344 SEFELRSRYFIMLCDNETAIAHAKKTSIWAVKKDSSKRISDAYKKASVYFIFVAQQTYNALGYAQVVSDLNSTELPFWSDSSHAGGVRIKWIKTCNLFSAEISEIVSHMDHGSEARDGMEMMYDEGSRLCTLIN 477
                                   353       363       373       383       393       403       413       423       433       443       453       463       473    


Chain B from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee.hhhhhhhhhhhheeeeehhhhhhhhhhhh..eeeeeeee.....eeeeeee................eeeeeeeeeeeeeee.hhhhhhhhhhh............hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eip B 344 SEFELRSRYFIMLCDNETAIAHAKKTSIWAVKKDSSKRISDAYKKASVYFIFVAQQTYNALGYAQVVSDLNSTELPFWSDSSHAGGVRIKWIKTCNLFSAEISEIVSHMDHGSEARDGMEMMYDEGSRLCTLIN 477
                                   353       363       373       383       393       403       413       423       433       443       453       463       473
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EIP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EIP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EIP)

(-) Gene Ontology  (8, 8)

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 Related Entries

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UniProtKB/Swiss-Prot
        MMI1_SCHPO | O74958: 5dno 5dnp 5eim 5h8a 5hfz

(-) Related Entries Specified in the PDB File

5eim