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(-) Description

Title :  CRYSTAL STRUCTURE OF MMI1 YTH DOMAIN
 
Authors :  C. Y. Wang, Y. W. Zhu, Y. Y. Shi, J. H. Wu
Date :  10 Sep 15  (Deposition) - 06 Apr 16  (Release) - 06 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Rna Binding, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Y. Wang, Y. W. Zhu, H. Y. Bao, Y. Y. Jiang, C. Xu, J. H. Wu, Y. Y. Shi
A Novel Rna-Binding Mode Of The Yth Domain Reveals The Mechanism For Recognition Of Determinant Of Selective Removal By Mmi1
Nucleic Acids Res. V. 44 969 2016
PubMed-ID: 26673708  |  Reference-DOI: 10.1093/NAR/GKV1382

(-) Compounds

Molecule 1 - YTH DOMAIN-CONTAINING PROTEIN MMI1
    Atcc: 24843
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Strain: BL21-GOLD(DE3)PLYSS AG
    Expression System Taxid: 866768
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 322-488
    Gene: MMI1, SPCC736.12C
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE 972H-
    Organism Taxid: 284812
    Strain: 972
    Synonym: MEIOTIC MRNA INTERCEPTION PROTEIN 1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1PO41Ligand/IonPHOSPHATE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1PO4-1Ligand/IonPHOSPHATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:352 , TYR A:392 , CYS A:473binding site for residue PO4 A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DNP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DNP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DNP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DNP)

(-) Exons   (0, 0)

(no "Exon" information available for 5DNP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:145
                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeeeee.hhhhhhhhhhhheeeeehhhhhhhhhhhhhheeeeeeee.....eeeeeee................eeeeeeeeeeeeeee.hhhhhhhhhh...........eehhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dnp A 338 RVVLDENGISHRSRYFIMLCDNETAIAHAKKTSIWAVKKDSSKRISDAYKKASVYFIFVAQQTYNALGYAQVVSDLNSTELPFWSDSSHAGGVRIKWIKTCNLFSAEISEIVSHMDHGSEARDGMEMMYDEGSRLCTLINYAIMK 482
                                   347       357       367       377       387       397       407       417       427       437       447       457       467       477     


Chain B from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhheeeeehhhhhhhhhhhhhheeeeeeee.....eeeeeee................eeeeeeeeeeeeeee.hhhhhhhhhh...........eehhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dnp B 349 RSRYFIMLCDNETAIAHAKKTSIWAVKKDSSKRISDAYKKASVYFIFVAQQTYNALGYAQVVSDLNSTELPFWSDSSHAGGVRIKWIKTCNLFSAEISEIVSHMDHGSEARDGMEMMYDEGSRLCTLINYAIMK 482
                                   358       368       378       388       398       408       418       428       438       448       458       468       478
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DNP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DNP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DNP)

(-) Gene Ontology  (8, 8)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MMI1_SCHPO | O74958: 5dno 5eim 5eip 5h8a 5hfz

(-) Related Entries Specified in the PDB File

5dno