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(-) Description

Title :  YTH DOMAIN-CONTAINING PROTEIN MMI1 AND RNA COMPLEX
 
Authors :  B. X. Wu, J. H. Xu, S. C. Su, J. B. Ma
Date :  30 Oct 15  (Deposition) - 27 Jan 16  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.54
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Mmi1, Dsr, Yth, Rna Binding Protein-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. X. Wu, J. H. Xu, S. C. Su, J. B. Ma
Cystal Structure Of Yth Domain Of Spmmi1-Dsr Complex.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - YTH DOMAIN-CONTAINING PROTEIN MMI1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 326-488
    Gene: MMI1, SPCC736.12C
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE 972H-
    Organism Taxid: 284812
    Strain: 972H-
    Synonym: YTH DOMAIN OF SPMMI1, MEIOTIC MRNA INTERCEPTION PROTEIN 1
 
Molecule 2 - RNA (5'-R(*AP*UP*UP*AP*AP*AP*CP*A)-3')
    Chains: C, D
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5EIM)

(-) Sites  (0, 0)

(no "Site" information available for 5EIM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EIM)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ile A:484 -Gly A:485

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EIM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EIM)

(-) Exons   (0, 0)

(no "Exon" information available for 5EIM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.......ee........eeeeeeee.hhhhhhhhhhhheeeeehhhhhhhhhhhh..eeeeeeee.....eeeeeee................eeeeeeeeeeeeeee.hhhhhhhhhhh..........eehhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eim A 330 ERISMINPRVVLDENGISHRSRYFIMLCDNETAIAHAKKTSIWAVKKDSSKRISDAYKKASVYFIFVAQQTYNALGYAQVVSDLNSTELPFWSDSSHAGGVRIKWIKTCNLFSAEISEIVSHMDHGSEARDGMEMMYDEGSRLCTLINYAIMKRIGR 486
                                   339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       


Chain B from PDB  Type:PROTEIN  Length:161
                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.......ee........eeeeeeeehhhhhh.....eeeeeeehhhhhhhhhhhhhheeeeeeee.....eeeeeee................eeeeeeeeeeeeeee.hhhhhhhhhh...........eehhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eim B 327 EKGERISMINPRVVLDENGISHRSRYFIMLCDNETAIAHAKKTSIWAVKKDSSKRISDAYKKASVYFIFVAQQTYNALGYAQVVSDLNSTELPFWSDSSHAGGVRIKWIKTCNLFSAEISEIVSHMDHGSEARDGMEMMYDEGSRLCTLINYAIMKRIGRD 487
                                   336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486 


Chain C from PDB  Type:RNA  Length:8
                                        
                 5eim C   1 AUUAAACA   8


Chain D from PDB  Type:RNA  Length:8
                                        
                 5eim D   1 AUUAAACA   8
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EIM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EIM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EIM)

(-) Gene Ontology  (8, 8)

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  Cis Peptide Bonds
    Ile A:484 - Gly A:485   [ RasMol ]  
 
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  MMI1_SCHPO | O74958
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MMI1_SCHPO | O74958: 5dno 5dnp 5eip 5h8a 5hfz

(-) Related Entries Specified in the PDB File

5eip