5EF4 - JenaLib

Title :   2.05 A CRYSTAL STRUCTURE OF THE AMB A 11 CYSTEINE PROTEASE, A MAJOR RAGWEED POLLEN ALLERGEN, IN ITS PROFORM

Authors :   P. Briozzo, D. Kopecny, M. Savko

Date :   23 Oct 15 (Deposition) - 27 Apr 16 (Release) - 29 Jun 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Allergen, Ragweed, Cysteine Protease, Propeptide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Groeme, S. Airouche, D. Kopecny, J. Jaekel, M. Savko, N. Berjont, L. Bussieres, M. Le Mignon, F. Jagic, P. Zieglmayer, V. Baron-Bodo, V. Bordas-Le Floch, L. Mascarell, P. Briozzo, P. Moingeon
Structural And Functional Characterization Of The Major Allergen Amb A 11 From Short Ragweed Pollen.
J. Biol. Chem. V. 291 13076 2016
PubMed-ID: 27129273 | Reference-DOI: 10.1074/JBC.M115.702001

Compounds

Molecule 1 - CYSTEINE PROTEASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-15B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 23-386
	Organism Common	:	SHORT RAGWEED
	Organism Scientific	:	AMBROSIA ARTEMISIIFOLIA
	Organism Taxid	:	4212

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 4)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	GOL	4	Ligand/Ion	GLYCEROL

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	GOL	4	Ligand/Ion	GLYCEROL

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PRO A:112 , GLY A:113 , SER A:114 , PRO A:244 , GLY A:245 , MET A:338 , HIS A:339	binding site for residue GOL A 501
2	AC2	SOFTWARE	TYR A:62 , ASN A:63 , ARG A:66 , MET A:87 , THR A:88 , ASN A:89 , HOH A:653 , ALA B:106 , GLU B:286	binding site for residue GOL A 502
3	AC3	SOFTWARE	GLU A:91 , ASN A:94 , HOH A:651 , LYS B:100 , HIS B:103	binding site for residue GOL A 503
4	AC4	SOFTWARE	GLU A:224 , THR A:225 , MET B:37 , TYR B:40 , ARG B:52 , SER B:53 , PRO B:54	binding site for residue GOL A 504

SS Bonds (6, 6)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:328
                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.....eee........hhhhhhhhhh..hhhhhhhhhh...................ee.hhhh............hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh...hhhhh.hhhhhhhhhhhh..................hhhhh.......eeee....hhhhhhhhhh...eeeee...hhhhhheeeeee.........eeeeeeeeee.....eeeeee...........eeeee......hhhhh...eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ef4 A   5 SHHHHHHSHMFHYHERELESEEGFMGMYDRWREQHNIEMRSPERFNVFKYNVRRIHESNKMDKPYKLKVNEFADMTNLEFVNTYANSKISHFQALRGSAPGSKDFIYANVTKIPDKVDWREKNAVTDVKGQGGCGSCWAFAAVVALEGINAIRTGKLVKFSEQQLVDCDMTNAGCDGGLMEPAFTYVIKHGGIAPEASYPYVGKRETCDKAKIKDVLKIDGRQNVPGLDEEALRKAVAHQPVATGIQLSGHGLQFYSEGVYTGDCGTEPNHGVGIVGYGENEKGIKFWTVKNSWGPTWGEKGYIHLQRGARKEGLCGVAMHSSFPIMN 346
                                   |22        32        42        52        62        72        82        92       102       112 ||    128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338        
                                  12|                                                                                          114|                                                                                                                                                                                                                                 
                                   21                                                                                           121

Chain B from PDB  Type:PROTEIN  Length:322
                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh....eee........hhhhhhhhhh..hhhhhhhhh....................ee.hhhh............hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh...hhhhh.hhhhhhhhhhhh..................hhhhh.......eeee....hhhhhhhhhh...eeeee...hhhhhheeeeee.........eeeeeeeeee.....eeeeee...........eeeee......hhhhh...eeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ef4 B  21 HMFHYHERELESEEGFMGMYDRWREQHNIEMRSPERFNVFKYNVRRIHESNKMDKPYKLKVNEFADMTNLEFVNTYANSKISHFQALRGSAPGSIDFIYANVTKIPDKVDWREKNAVTDVKGQGGCGSCWAFAAVVALEGINAIRTGKLVKFSEQQLVDCDMTNAGCDGGLMEPAFTYVIKHGGIAPEASYPYVGKRETCDKAKIKDVLKIDGRQNVPGLDEEALRKAVAHQPVATGIQLSGHGLQFYSEGVYTGDCGTEPNHGVGIVGYGENEKGIKFWTVKNSWGPTWGEKGYIHLQRGARKEGLCGVAMHSSFPIMNDP 348
                                    30        40        50        60        70        80        90       100       110    || 126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346  
                                                                                                                        115|                                                                                                                                                                                                                                  
                                                                                                                         122

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (4, 4)

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