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(-) Description

Title :  2.70 A CRYSTAL STRUCTURE OF THE AMB A 11 CYSTEINE PROTEASE, A MAJOR RAGWEED POLLEN ALLERGEN, IN ITS PROFORM
 
Authors :  P. Briozzo, D. Kopecny
Date :  27 Oct 15  (Deposition) - 27 Apr 16  (Release) - 29 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Allergen, Ragweed, Cysteine Protease, Propeptide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Groeme, S. Airouche, D. Kopecny, J. Jaekel, M. Savko, N. Berjont, L. Bussieres, M. Le Mignon, F. Jagic, P. Zieglmayer, V. Baron-Bodo, V. Bordas-Le Floch, L. Mascarell, P. Briozzo, P. Moingeon
Structural And Functional Characterization Of The Major Allergen Amb A 11 From Short Ragweed Pollen.
J. Biol. Chem. V. 291 13076 2016
PubMed-ID: 27129273  |  Reference-DOI: 10.1074/JBC.M115.702001

(-) Compounds

Molecule 1 - CYSTEINE PROTEASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-15B
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Common: SHORT RAGWEED
    Organism Scientific: AMBROSIA ARTEMISIIFOLIA
    Organism Taxid: 4212

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5EGW)

(-) Sites  (0, 0)

(no "Site" information available for 5EGW)

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1A:152 -A:193
2A:186 -A:226
3A:283 -A:334
4B:152 -B:193
5B:186 -B:226
6B:283 -B:334

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Asn A:120 -Lys A:121
2Pro A:351 -Lys A:352
3Pro A:355 -Asn A:356
4Gly A:357 -Pro A:358

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EGW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EGW)

(-) Exons   (0, 0)

(no "Exon" information available for 5EGW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:363
                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh...eee........hhhhhhhhhh..hhhhhhhhh..........................ee.hhhh............hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh...hhhhh.hhhhhhhhhhhh..............................eeee....hhhhhhhhhh...eeeee...hhhhhheeeeee.........eeeeeeeeee.....eeeeee...........eeeee......hhhhh...eeeee........................................ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5egw A  22 MFHYHERELESEEGFMGMYDRWREQHNIEMRSPERFNVFKYNVRRIHESNKMDKPYKLKVNEFADMTNLEFVNTYANSKISHFQALRGSAPGSIDTDPNKDFIYANVTKIPDKVDWREKNAVTDVKGQGGCGSCWAFAAVVALEGINAIRTGKLVKFSEQQLVDCDMTNAGCDGGLMEPAFTYVIKHGGIAPEASYPYVGKRETCDKAKIKDVLKIDGRQNVPGLDEEALRKAVAHQPVATGIQLSGHGLQFYSEGVYTGDCGTEPNHGVGIVGYGENEKGIKFWTVKNSWGPTWGEKGYIHLQRGARKEGLCGVAMHSSFPIMNDPNPPKPNGPKDDPDAPKDPKFKTTQRLQGIRTKLLEL 386
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351||     363       373       383   
                                                                                                                                                                                                                                                                                                                                                                    352|                               
                                                                                                                                                                                                                                                                                                                                                                     355                               


Chain B from PDB  Type:PROTEIN  Length:325
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh...eee........hhhhhhhhhh..hhhhhhhhh.....................ee.hhhh............hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh...hhhhh.hhhhhhhhhhhh..............................eeee....hhhhhhhhhh...eeeee...hhhhhheeeeee.........eeeeeeeeee.....eeeeee...........eeeee......hhhhh...eeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5egw B  21 HMFHYHERELESEEGFMGMYDRWREQHNIEMRSPERFNVFKYNVRRIHESNKMDKPYKLKVNEFADMTNLEFVNTYANSKISHFQALRGSAPGSNKDFIYANVTKIPDKVDWREKNAVTDVKGQGGCGSCWAFAAVVALEGINAIRTGKLVKFSEQQLVDCDMTNAGCDGGLMEPAFTYVIKHGGIAPEASYPYVGKRETCDKAKIKDVLKIDGRQNVPGLDEEALRKAVAHQPVATGIQLSGHGLQFYSEGVYTGDCGTEPNHGVGIVGYGENEKGIKFWTVKNSWGPTWGEKGYIHLQRGARKEGLCGVAMHSSFPIMNDPNP 350
                                    30        40        50        60        70        80        90       100       110   ||  125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345     
                                                                                                                       114|                                                                                                                                                                                                                                      
                                                                                                                        120
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EGW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EGW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EGW)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asn A:120 - Lys A:121   [ RasMol ]  
    Gly A:357 - Pro A:358   [ RasMol ]  
    Pro A:351 - Lys A:352   [ RasMol ]  
    Pro A:355 - Asn A:356   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        V5LU01_AMBAR | V5LU01: 5ef4

(-) Related Entries Specified in the PDB File

5ef4 5EF4 CONTAINS THE SAME PROTEIN BUT IS A 2.05 A STRUCTURE