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(-) Description

Title :  CRYSTAL STRUCTURE OF PASTA DOMAINS 2, 3 AND 4 OF MYCOBACTERIUM TUBERCULOSIS PROTEIN KINASE B
 
Authors :  D. M. Prigozhin, Tb Structural Genomics Consortium (Tbsgc)
Date :  29 Sep 15  (Deposition) - 14 Sep 16  (Release) - 09 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.21
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Kinase, Extracellular Sensor Domain, Peptidoglycan Binding, Structural Genomics, Tb Structural Genomics Consortium, Tbsgc, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. M. Prigozhin, K. G. Papavinasasundaram, C. E. Baer, K. C. Murphy, A. Moskaleva, T. Y. Chen, T. Alber, C. M. Sassetti
Structural And Genetic Analyses Of The Mycobacterium Tuberculosis Protein Kinase B Sensor Domain Identify A Potential Ligand-Binding Site.
J. Biol. Chem. V. 291 22961 2016
PubMed-ID: 27601474  |  Reference-DOI: 10.1074/JBC.M116.731760

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE PKNB
    Chains: A, B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 423-626
    Gene: PKNB, RV0014C, MTCY10H4.14C
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: ATCC 25618 / H37RV

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1FLC-1Ligand/IonCITRATE ANION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:571 , LYS A:589 , ASN A:601 , PHE A:624 , HOH A:820binding site for residue FLC A 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5E12)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Asn A:471 -Pro A:472
2Asn A:538 -Pro A:539
3Asn A:607 -Pro A:608
4Asn B:471 -Pro B:472
5Asn B:538 -Pro B:539
6Asn B:607 -Pro B:608

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E12)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E12)

(-) Exons   (0, 0)

(no "Exon" information available for 5E12)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.......hhhhhhhhhhhh....eeeeee..hhhhh..eeeee.....eee....eeeeee....eee.......hhhhhhhhhhh....eeeeeee........eeeee.....eee...eeeeeee...eee.......hhhhhhhhhhhh.....eee......hhhhh..eeeee.....eee....eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e12 A 425 EQREIPDVSTLTYAEAVKKLTAAGFGRFKQANSPSTPELVGKVIGTNPPANQTSAITNVVIIIVGSGPATKDIPDVAGQTVDVAQKNLNVYGFTKFSQASVDSPRPAGEVTGTNPPAGTTVPVDSVIELQVSKGNQFVMPDLSGMFWVDAEPRLRALGWTGMLDKGADVDAGGSQHNRVVYQNPPAGTGVNRDGIITLRFGQ 626
                                   434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624  


Chain B from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.......hhhhhhhhhhhhh...eeeeee.........eeeee.....eee....eeeeee....eee.......hhhhhhhhhhh.....eeeeee........eeeee.....eee....eeeeee...eee.......hhhhhhhhhhhh...........eee.....eee.....eee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e12 B 425 EQREIPDVSTLTYAEAVKKLTAAGFGRFKQANSPSTPELVGKVIGTNPPANQTSAITNVVIIIVGSGPATKDIPDVAGQTVDVAQKNLNVYGFTKFSQASVDSPRPAGEVTGTNPPAGTTVPVDSVIELQVSKGNQFVMPDLSGMFWVDAEPRLRALGWTGMLDKRVVYQNPPAGTGVNRDGIITLRFG 625
                                   434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584    || 606       616         
                                                                                                                                                                                              589|                       
                                                                                                                                                                                               602
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5E12)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5E12)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E12)

(-) Gene Ontology  (27, 27)

Asymmetric Unit(hide GO term definitions)

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  5e12
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  PKNB_MYCTU | P9WI81
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PKNB_MYCTU | P9WI81: 1mru 1o6y 2fum 2kud 2kue 2kuf 2kui 3f61 3f69 5e0y 5e0z 5e10

(-) Related Entries Specified in the PDB File

3ouv 5e0y 5e0z 5e10