Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  CATALYTIC DOMAIN OF PROTEIN KINASE PKNB FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MITOXANTRONE
 
Authors :  A. Wehenkel, P. M. Alzari
Date :  27 Jan 06  (Deposition) - 01 Aug 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.89
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Protein Kinase-Inhibitor Complex, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Wehenkel, P. Fernandez, M. Bellinzoni, V. Catherinot, N. Barilone G. Labesse, M. Jackson, P. M. Alzari
The Structure Of Pknb In Complex With Mitoxantrone, An Atp-Competitive Inhibitor, Suggests A Mode Of Protein Kinas Regulation In Mycobacteria
Febs Lett. V. 580 3018 2006
PubMed-ID: 16674948  |  Reference-DOI: 10.1016/J.FEBSLET.2006.04.046

(-) Compounds

Molecule 1 - PROBABLE SERINE/THREONINE-PROTEIN KINASE PKNB
    ChainsA, B, C, D
    EC Number2.7.1.37
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET28
    Expression System StrainBL21 (DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentCATALYTIC DOMAIN
    GenePKNB
    Organism ScientificMYCOBACTERIUM TUBERCULOSIS H37RV
    Organism Taxid83332
    StrainH37RV
    SynonymPKNB SER/THR KINASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A   
Biological Unit 2 (1x) B  
Biological Unit 3 (1x)  C 
Biological Unit 4 (1x)   D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1MIX4Ligand/Ion1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1MIX1Ligand/Ion1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1MIX1Ligand/Ion1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1MIX1Ligand/Ion1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1MIX1Ligand/Ion1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:17 , PHE A:19 , ALA A:38 , GLU A:93 , TYR A:94 , VAL A:95 , GLY A:97 , ASP A:102 , LYS A:140 , ALA A:142 , ASN A:143 , MET A:145 , ASP B:219BINDING SITE FOR RESIDUE MIX A 539
2AC2SOFTWAREASP A:219 , LEU B:17 , GLY B:18 , PHE B:19 , ALA B:38 , GLU B:93 , TYR B:94 , VAL B:95 , GLY B:97 , LYS B:140 , ASN B:143 , MET B:145 , ASP B:156BINDING SITE FOR RESIDUE MIX B 1539
3AC3SOFTWARELEU C:17 , PHE C:19 , ALA C:38 , MET C:92 , GLU C:93 , VAL C:95 , GLY C:97 , ASN C:143 , MET C:155 , ASP C:156BINDING SITE FOR RESIDUE MIX C 2539
4AC4SOFTWARELEU D:17 , GLY D:18 , PHE D:19 , VAL D:25 , ALA D:38 , MET D:92 , VAL D:95 , GLY D:97 , VAL D:98 , ASP D:138 , ASN D:143 , MET D:145 , MET D:155 , ASP D:156BINDING SITE FOR RESIDUE MIX D 3539

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FUM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2FUM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FUM)

(-) PROSITE Motifs  (2, 8)

Asymmetric Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.PKNB_MYCTO17-40
 
 
 
  4A:17-40
B:17-40
C:17-40
D:17-40
PKNB_MYCTU17-40
 
 
 
  4A:17-40
B:17-40
C:17-40
D:17-40
2PROTEIN_KINASE_STPS00108 Serine/Threonine protein kinases active-site signature.PKNB_MYCTO134-146
 
 
 
  4A:134-146
B:134-146
C:134-146
D:134-146
PKNB_MYCTU134-146
 
 
 
  4A:134-146
B:134-146
C:134-146
D:134-146
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.PKNB_MYCTO17-40
 
 
 
  1A:17-40
-
-
-
PKNB_MYCTU17-40
 
 
 
  1A:17-40
-
-
-
2PROTEIN_KINASE_STPS00108 Serine/Threonine protein kinases active-site signature.PKNB_MYCTO134-146
 
 
 
  1A:134-146
-
-
-
PKNB_MYCTU134-146
 
 
 
  1A:134-146
-
-
-
Biological Unit 2 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.PKNB_MYCTO17-40
 
 
 
  1-
B:17-40
-
-
PKNB_MYCTU17-40
 
 
 
  1-
B:17-40
-
-
2PROTEIN_KINASE_STPS00108 Serine/Threonine protein kinases active-site signature.PKNB_MYCTO134-146
 
 
 
  1-
B:134-146
-
-
PKNB_MYCTU134-146
 
 
 
  1-
B:134-146
-
-
Biological Unit 3 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.PKNB_MYCTO17-40
 
 
 
  1-
-
C:17-40
-
PKNB_MYCTU17-40
 
 
 
  1-
-
C:17-40
-
2PROTEIN_KINASE_STPS00108 Serine/Threonine protein kinases active-site signature.PKNB_MYCTO134-146
 
 
 
  1-
-
C:134-146
-
PKNB_MYCTU134-146
 
 
 
  1-
-
C:134-146
-
Biological Unit 4 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.PKNB_MYCTO17-40
 
 
 
  1-
-
-
D:17-40
PKNB_MYCTU17-40
 
 
 
  1-
-
-
D:17-40
2PROTEIN_KINASE_STPS00108 Serine/Threonine protein kinases active-site signature.PKNB_MYCTO134-146
 
 
 
  1-
-
-
D:134-146
PKNB_MYCTU134-146
 
 
 
  1-
-
-
D:134-146

(-) Exons   (0, 0)

(no "Exon" information available for 2FUM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:263
 aligned with PKNB_MYCTO | P9WI80 from UniProtKB/Swiss-Prot  Length:626

    Alignment length:275
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272     
           PKNB_MYCTO     3 TPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH 277
               SCOP domains d2fuma_ A: Mycobacterial protein kinase PknB, catalytic domain                                                                                                                                                                                                                      SCOP domains
               CATH domains 2fumA01 A:3-94 Phosphorylase Kinase; domain 1                                               -2fumA02 A:96-277 Transferase(Phosphotransferase) domain 1                                                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...eeeeeeeee...eeeeeeee....eeeeeeee..hhhhhhhhhh.hhhhhhhhhh........eeeeeee......eeeeee....eeehhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.......hhh.eeee....eee...........------------......hhhhhhh...hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh...hhhhhh...hhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------PROTEIN_KINASE_ATP      ---------------------------------------------------------------------------------------------PROTEIN_KINAS----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fum A   3 TPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIAD------------GTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH 277
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162  |      -     | 182       192       202       212       222       232       242       252       262       272     
                                                                                                                                                                                            165          178                                                                                                   

Chain A from PDB  Type:PROTEIN  Length:263
 aligned with PKNB_MYCTU | P9WI81 from UniProtKB/Swiss-Prot  Length:626

    Alignment length:275
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272     
           PKNB_MYCTU     3 TPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH 277
               SCOP domains d2fuma_ A: Mycobacterial protein kinase PknB, catalytic domain                                                                                                                                                                                                                      SCOP domains
               CATH domains 2fumA01 A:3-94 Phosphorylase Kinase; domain 1                                               -2fumA02 A:96-277 Transferase(Phosphotransferase) domain 1                                                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...eeeeeeeee...eeeeeeee....eeeeeeee..hhhhhhhhhh.hhhhhhhhhh........eeeeeee......eeeeee....eeehhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.......hhh.eeee....eee...........------------......hhhhhhh...hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh...hhhhhh...hhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------PROTEIN_KINASE_ATP      ---------------------------------------------------------------------------------------------PROTEIN_KINAS----------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fum A   3 TPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIAD------------GTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH 277
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162  |      -     | 182       192       202       212       222       232       242       252       262       272     
                                                                                                                                                                                            165          178                                                                                                   

Chain B from PDB  Type:PROTEIN  Length:262
 aligned with PKNB_MYCTO | P9WI80 from UniProtKB/Swiss-Prot  Length:626

    Alignment length:276
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272      
           PKNB_MYCTO     3 TPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN 278
               SCOP domains d2fumb_ B: Mycobacterial protein kinase PknB, catalytic domain                                                                                                                                                                                                                       SCOP domains
               CATH domains 2fumB01 B:3-94 Phosphorylase Kinase; domain 1                                               -2fumB02 B:96-278 Transferase(Phosphotransferase) domain 1                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee...eeeeeeeee...eeeeeeee....eeeeeeee..hhhhhhhhhhhhhhhhhhhhh........eeeeeeeee..eeeeeeee....eeehhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.......hhh.eeee....eee.........--------------......hhhhhhh...hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh....hhhhhh...hhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------PROTEIN_KINASE_ATP      ---------------------------------------------------------------------------------------------PROTEIN_KINAS------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fum B   3 TPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAI--------------GTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN 278
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162|        -     | 182       192       202       212       222       232       242       252       262       272      
                                                                                                                                                                                          163            178                                                                                                    

Chain B from PDB  Type:PROTEIN  Length:262
 aligned with PKNB_MYCTU | P9WI81 from UniProtKB/Swiss-Prot  Length:626

    Alignment length:276
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272      
           PKNB_MYCTU     3 TPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN 278
               SCOP domains d2fumb_ B: Mycobacterial protein kinase PknB, catalytic domain                                                                                                                                                                                                                       SCOP domains
               CATH domains 2fumB01 B:3-94 Phosphorylase Kinase; domain 1                                               -2fumB02 B:96-278 Transferase(Phosphotransferase) domain 1                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee...eeeeeeeee...eeeeeeee....eeeeeeee..hhhhhhhhhhhhhhhhhhhhh........eeeeeeeee..eeeeeeee....eeehhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.......hhh.eeee....eee.........--------------......hhhhhhh...hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh....hhhhhh...hhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) --------------PROTEIN_KINASE_ATP      ---------------------------------------------------------------------------------------------PROTEIN_KINAS------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fum B   3 TPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAI--------------GTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN 278
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162|        -     | 182       192       202       212       222       232       242       252       262       272      
                                                                                                                                                                                          163            178                                                                                                    

Chain C from PDB  Type:PROTEIN  Length:254
 aligned with PKNB_MYCTO | P9WI80 from UniProtKB/Swiss-Prot  Length:626

    Alignment length:276
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272      
           PKNB_MYCTO     3 TPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN 278
               SCOP domains d2fumc_ C: Mycobacterial protein kinase PknB, catalytic domain                                                                                                                                                                                                                       SCOP domains
               CATH domains 2fumC01 C:3-94 Phosphorylase Kinase; domain 1                                               -2fumC02 C:96-278 Transferase(Phosphotransferase) domain 1                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee...eeeeeeee.....eeeeeee....eeeeeee.......hhhhhh....hhhhhhh........eeeeeee......eeeeeee...eeehhhhhhhh......hhhhhhhhhhhhhhhhhhh.......hhh.eeee....eee...----------------------....hhhhhh....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh...hhhhh....hhhhhhhhhhhh..hhhhh..hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------PROTEIN_KINASE_ATP      ---------------------------------------------------------------------------------------------PROTEIN_KINAS------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fum C   3 TPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDF----------------------AQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN 278
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152    |    -         -       182       192       202       212       222       232       242       252       262       272      
                                                                                                                                                                                    157                    180                                                                                                  

Chain C from PDB  Type:PROTEIN  Length:254
 aligned with PKNB_MYCTU | P9WI81 from UniProtKB/Swiss-Prot  Length:626

    Alignment length:276
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272      
           PKNB_MYCTU     3 TPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN 278
               SCOP domains d2fumc_ C: Mycobacterial protein kinase PknB, catalytic domain                                                                                                                                                                                                                       SCOP domains
               CATH domains 2fumC01 C:3-94 Phosphorylase Kinase; domain 1                                               -2fumC02 C:96-278 Transferase(Phosphotransferase) domain 1                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee...eeeeeeee.....eeeeeee....eeeeeee.......hhhhhh....hhhhhhh........eeeeeee......eeeeeee...eeehhhhhhhh......hhhhhhhhhhhhhhhhhhh.......hhh.eeee....eee...----------------------....hhhhhh....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh...hhhhh....hhhhhhhhhhhh..hhhhh..hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) --------------PROTEIN_KINASE_ATP      ---------------------------------------------------------------------------------------------PROTEIN_KINAS------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fum C   3 TPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDF----------------------AQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN 278
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152    |    -         -       182       192       202       212       222       232       242       252       262       272      
                                                                                                                                                                                    157                    180                                                                                                  

Chain D from PDB  Type:PROTEIN  Length:258
 aligned with PKNB_MYCTO | P9WI80 from UniProtKB/Swiss-Prot  Length:626

    Alignment length:275
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272     
           PKNB_MYCTO     3 TPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH 277
               SCOP domains d2fumd_ D: Mycobacterial protein kinase PknB, catalytic domain                                                                                                                                                                                                                      SCOP domains
               CATH domains 2fumD01 D:3-94 Phosphorylase Kinase; domain 1                                               -2fumD02 D:96-277 Transferase(Phosphotransferase) domain 1                                                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...eeeeeeee.....eeeeeee....eeeeeee.......hhhhhh...hhhhhhhh........eeeeeee......eeeeeee...eeehhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeee....eee.....-----------------.......hhhhhhh...hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh...hhhhh....hhhhhhhhhhhh..hhhhh..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------PROTEIN_KINASE_ATP      ---------------------------------------------------------------------------------------------PROTEIN_KINAS----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fum D   3 TPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGI-----------------IGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH 277
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152      |  -         -    |  182       192       202       212       222       232       242       252       262       272     
                                                                                                                                                                                      159               177                                                                                                    

Chain D from PDB  Type:PROTEIN  Length:258
 aligned with PKNB_MYCTU | P9WI81 from UniProtKB/Swiss-Prot  Length:626

    Alignment length:275
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272     
           PKNB_MYCTU     3 TPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH 277
               SCOP domains d2fumd_ D: Mycobacterial protein kinase PknB, catalytic domain                                                                                                                                                                                                                      SCOP domains
               CATH domains 2fumD01 D:3-94 Phosphorylase Kinase; domain 1                                               -2fumD02 D:96-277 Transferase(Phosphotransferase) domain 1                                                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...eeeeeeee.....eeeeeee....eeeeeee.......hhhhhh...hhhhhhhh........eeeeeee......eeeeeee...eeehhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeee....eee.....-----------------.......hhhhhhh...hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh...hhhhh....hhhhhhhhhhhh..hhhhh..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------PROTEIN_KINASE_ATP      ---------------------------------------------------------------------------------------------PROTEIN_KINAS----------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fum D   3 TPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGI-----------------IGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH 277
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152      |  -         -    |  182       192       202       212       222       232       242       252       262       272     
                                                                                                                                                                                      159               177                                                                                                    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FUM)

(-) Gene Ontology  (27, 39)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (PKNB_MYCTO | P9WI80)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A,B,C,D   (PKNB_MYCTU | P9WI81)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0030145    manganese ion binding    Interacting selectively and non-covalently with manganese (Mn) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0040007    growth    The increase in size or mass of an entire organism, a part of an organism or a cell.
    GO:0043086    negative regulation of catalytic activity    Any process that stops or reduces the activity of an enzyme.
    GO:0045717    negative regulation of fatty acid biosynthetic process    Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of fatty acids.
    GO:0032091    negative regulation of protein binding    Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0043388    positive regulation of DNA binding    Any process that increases the frequency, rate or extent of DNA binding. DNA binding is any process in which a gene product interacts selectively with DNA (deoxyribonucleic acid).
    GO:0043085    positive regulation of catalytic activity    Any process that activates or increases the activity of an enzyme.
    GO:0046777    protein autophosphorylation    The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation).
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:0008360    regulation of cell shape    Any process that modulates the surface configuration of a cell.
    GO:0051338    regulation of transferase activity    Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0052572    response to host immune response    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
cellular component
    GO:0005618    cell wall    The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    MIX  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2fum)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2fum
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PKNB_MYCTO | P9WI80
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  PKNB_MYCTU | P9WI81
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  2.7.1.37
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  PKNB_MYCTO | P9WI80
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PKNB_MYCTU | P9WI81
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PKNB_MYCTO | P9WI801mru 1o6y 2kud 2kue 2kuf 2kui 3f61 3f69
        PKNB_MYCTU | P9WI811mru 1o6y 2kud 2kue 2kuf 2kui 3f61 3f69 5e0y 5e0z 5e10 5e12

(-) Related Entries Specified in the PDB File

1o6y THE CRYSTAL STRUCTURE OF THE SAME PROTEIN IN COMPLEX WITH AN ATP ANALOGUE, AMP-PCP.