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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN TRANSCRIPTION FACTOR TEAD2 IN COMPLEX WITH BROMO-FENAMIC ACID
 
Authors :  X. Han, X. Luo
Date :  14 Sep 15  (Deposition) - 25 Nov 15  (Release) - 25 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.18
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Flufenamates, Hippo Pathway, Cancer Therapy, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. V. Pobbati, X. Han, A. W. Hung, S. Weiguang, N. Huda, G. -Y. Chen, C. Kang, C. S. B. Chia, X. Luo
Targeting The Central Pocket In Human Transcription Factor Tead As A Potential Cancer Therapeutic Strategy
Structure V. 23 2076 2015
PubMed: search  |  Reference-DOI: 10.1016/J.STR.2015.09.009

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL ENHANCER FACTOR TEF-4
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET29
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 217-447
    Gene: TEAD2, TEF4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TEA DOMAIN FAMILY MEMBER 2,TEAD-2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
15E43Ligand/Ion2-[(3-BROMOPHENYL)AMINO]BENZOIC ACID
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
15E41Ligand/Ion2-[(3-BROMOPHENYL)AMINO]BENZOIC ACID
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
15E42Ligand/Ion2-[(3-BROMOPHENYL)AMINO]BENZOIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:233 , ALA A:235 , VAL A:329 , SER A:345 , VAL A:347 , LYS A:357 , MET A:379 , CYS A:380 , LEU A:383 , TYR A:426binding site for residue 5E4 A 501
2AC2SOFTWAREPHE B:233 , SER B:345 , VAL B:347 , LYS B:357 , MET B:379 , CYS B:380 , LEU B:383 , TYR B:426binding site for residue 5E4 B 501
3AC3SOFTWARELYS B:277 , LYS B:301 , TRP B:303 , GLU B:404 , VAL B:427 , GLU B:429binding site for residue 5E4 B 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DQE)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Lys A:281 -Lys A:282
2Gly A:292 -Pro A:293
3Glu B:280 -Lys B:281
4Gly B:292 -Pro B:293

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DQE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DQE)

(-) Exons   (0, 0)

(no "Exon" information available for 5DQE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeee...eeeeeee...eee.hhhhhhh.....hhhhhhhhhhhh.eeeeeeee.....eeeeeeeeee....eeeeeeeeee..eeeeeeeeeee.eee..eeeeeeeeee.hhhhhhhhhhhhhh.hhhhhhhhhh.eeeeeeeee.....eeeeeeeeeee.......eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dqe A 222 GLGTARLQLVEFSAFVEPQRHLFVHISQLESVDVRQIYDKFPEKKGGLRELYDRGPPHAFFLVKFWADLNWGFYGVSSQYESLEHMTLTCSSKVCSFGKQVVEKVETERAQLEDGRFVYRLLRSPMCEYLVNFLHKLRQLPERYMMNSVLENFTILQVVTNRDTQELLLCTAYVFEVSTSERGAQHHIYRLVR 446
                                   231       248       267       277       287       297       307||     333       343       353       363       373       383       393       403       413       423       433       443   
                                           239|      256|                                       308|                                                                                                                         
                                            247       266                                        325                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeeeehhhhhh....eeeeeee......eee.hhhhhhh.....hhhhhhhhhhhh.eeeeeeee......eeeeeeeeee....eeeeeeeeee..eeeeeeeeeee.eee..eeeeeeeeee.hhhhhhhhhhhhhh.hhhhhhhhhh.eeeeeeeee.....eeeeeeeeeee.......eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dqe B 220 ARGLGTARLQLVEFSAFVEPPDAVDSYQRHLFVHISQAPPLESVDVRQIYDKFPEKKGGLRELYDRGPPHAFFLVKFWADLNWGGFYGVSSQYESLEHMTLTCSSKVCSFGKQVVEKVETERAQLEDGRFVYRLLRSPMCEYLVNFLHKLRQLPERYMMNSVLENFTILQVVTNRDTQELLLCTAYVFEVSTSERGAQHHIYRLVRDV 448
                                   229       239       249      |265       275       285       295       305  ||   330       340       350       360       370       380       390       400       410       420       430       440        
                                                              256|                                          308|                                                                                                                            
                                                               263                                           324
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DQE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DQE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DQE)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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  TEAD2_HUMAN | Q15562
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TEAD2_HUMAN | Q15562: 3l15 5dq8 5emv 5hgu

(-) Related Entries Specified in the PDB File

3l15 3L15 CONTAINS THE SAME PROTEIN WITHOUT BOUND INHIBITOR
5dq8 5DQ8 CONTAINS THE SAME PROTEIN COMPLEXED WITH FLUFENAMIC ACID