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(-) Description

Title :  HUMAN TEAD2 TRANSCRIPTIONAL FACTOR
 
Authors :  D. R. Tomchick, X. Luo, W. Tian
Date :  10 Dec 09  (Deposition) - 07 Apr 10  (Release) - 19 May 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Activator, Dna-Binding, Nucleus, Transcription, Transcription Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Tian, J. Yu, D. R. Tomchick, D. Pan, X. Luo
Structural And Functional Analysis Of The Yap-Binding Domain Of Human Tead2.
Proc. Natl. Acad. Sci. Usa V. 107 7293 2010
PubMed-ID: 20368466  |  Reference-DOI: 10.1073/PNAS.1000293107
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL ENHANCER FACTOR TEF-4
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL RESIDUES 217-447
    Gene: TEAD2, TEF4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TEA DOMAIN FAMILY MEMBER 2, TEAD-2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric Unit (2, 11)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 7)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER B:345 , PRO B:378 , LEU B:383BINDING SITE FOR RESIDUE GOL B 1
2AC2SOFTWAREGLU A:267 , TYR A:442 , HOH B:39 , HOH B:110 , ASP B:305 , ASN B:307 , SER B:433 , GLU B:434BINDING SITE FOR RESIDUE GOL B 2
3AC3SOFTWAREHOH B:82 , SER B:268 , ARG B:443 , VAL B:445BINDING SITE FOR RESIDUE GOL B 3

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3L15)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Lys A:281 -Lys A:282
2Gly A:292 -Pro A:293
3Glu B:280 -Lys B:281
4Gly B:292 -Pro B:293

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3L15)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3L15)

(-) Exons   (0, 0)

(no "Exon" information available for 3L15)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:193
 aligned with TEAD2_HUMAN | Q15562 from UniProtKB/Swiss-Prot  Length:447

    Alignment length:225
                                   231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441     
          TEAD2_HUMAN   222 GLGTARLQLVEFSAFVEPPDAVDSYQRHLFVHISQHCPSPGAPPLESVDVRQIYDKFPEKKGGLRELYDRGPPHAFFLVKFWADLNWGPSGEEAGAGGSISSGGFYGVSSQYESLEHMTLTCSSKVCSFGKQVVEKVETERAQLEDGRFVYRLLRSPMCEYLVNFLHKLRQLPERYMMNSVLENFTILQVVTNRDTQELLLCTAYVFEVSTSERGAQHHIYRLVR 446
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeee.-------..eeeeeee.---------..eee.hhhhhhh.....hhhhhhhhhhhh.eeeeeeee....----------------.eeeeeeeeee....eeeeeeeeee..eeeeeeeeeee.eee..eeeeeeeeee.hhhhhhhhhhhh...hhhhhhhhhh.eeeeeeeee.....eeeeeeeeeee.......eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l15 A 222 GLGTARLQLVEFSAFVEP-------QRHLFVHISQ---------LESVDVRQIYDKFPEKKGGLRELYDRGPPHAFFLVKFWADLNW----------------GFYGVSSQYESLEHmTLTCSSKVCSFGKQVVEKVETERAQLEDGRFVYRLLRSPmCEYLVNFLHKLRQLPERYmmNSVLENFTILQVVTNRDTQELLLCTAYVFEVSTSERGAQHHIYRLVR 446
                                   231       | -     | 251    |    -    |  271       281       291       301      |  -         -   |   331       341       351       361       371       381       391      |401       411       421       431       441     
                                           239     247      256       266                                       308              325           339-MSE                                 379-MSE            398-MSE                                            
                                                                                                                                                                                                           399-MSE                                           


Chain B from PDB  Type:PROTEIN  Length:204
 aligned with TEAD2_HUMAN | Q15562 from UniProtKB/Swiss-Prot  Length:447

    Alignment length:226
                                   230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440      
          TEAD2_HUMAN   221 RGLGTARLQLVEFSAFVEPPDAVDSYQRHLFVHISQHCPSPGAPPLESVDVRQIYDKFPEKKGGLRELYDRGPPHAFFLVKFWADLNWGPSGEEAGAGGSISSGGFYGVSSQYESLEHMTLTCSSKVCSFGKQVVEKVETERAQLEDGRFVYRLLRSPMCEYLVNFLHKLRQLPERYMMNSVLENFTILQVVTNRDTQELLLCTAYVFEVSTSERGAQHHIYRLVR 446
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) TEA-3l15B01 B:221-439                                                                                                                                                                                                      ------- Pfam domains (1)
           Pfam domains (2) TEA-3l15B02 B:221-439                                                                                                                                                                                                      ------- Pfam domains (2)
         Sec.struct. author ........eeeeeeeeeehhhhhh....eeeeeee.------.....eee.hhhhhhh.....hhhhhhhhhhhh.eeeeeeee....----------------.eeeeeeeeee....eeeeeeeeee..eeeeeeeeeee.eee..eeeeeeeeee.hhhhhhhhhhhhh..hhhhhhhhhh.eeeeeeeee.....eeeeeeeeeee.......eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l15 B 221 RGLGTARLQLVEFSAFVEPPDAVDSYQRHLFVHISQ------APPLESVDVRQIYDKFPEKKGGLRELYDRGPPHAFFLVKFWADLNW----------------GFYGVSSQYESLEHmTLTCSSKVCSFGKQVVEKVETERAQLEDGRFVYRLLRSPmCEYLVNFLHKLRQLPERYmmNSVLENFTILQVVTNRDTQELLLCTAYVFEVSTSERGAQHHIYRLVR 446
                                   230       240       250     |   -  |    270       280       290       300       | -         -    |  330       340       350       360       370       380       390       400       410       420       430       440      
                                                             256    263                                          308              325           339-MSE                                 379-MSE            398-MSE                                            
                                                                                                                                                                                                            399-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3L15)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3L15)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: TEA] (3)
(-)
Family: TEA (3)
(-)
Homo sapiens (Human) (2)
1aTEA-3l15B01B:221-439
1bTEA-3l15B02B:221-439

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (TEAD2_HUMAN | Q15562)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0035329    hippo signaling    The series of molecular signals mediated by the serine/threonine kinase Hippo or one of its orthologs. In Drosophila, Hippo in complex with the scaffold protein Salvador (Sav), phosphorylates and activates Warts (Wts), which in turn phosphorylates and inactivates the Yorkie (Yki) transcriptional activator. The core fly components hippo, sav, wts and mats are conserved in mammals as STK4/3 (MST1/2), SAV1/WW45, LATS1/2 and MOB1.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006367    transcription initiation from RNA polymerase II promoter    Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TEAD2_HUMAN | Q15562: 5dq8 5dqe 5emv 5hgu

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