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(-) Description

Title :  CRYSTAL STRUCTURE OF EV71 3C PROTEINASE IN COMPLEX WITH COMPOUND 4
 
Authors :  C. Wu, L. Zhang, P. Li, Q. Cai, X. Peng, N. Li, Y. Cai, J. Li, T. Lin
Date :  12 Sep 15  (Deposition) - 30 Mar 16  (Release) - 06 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.03
Chains :  Asym./Biol. Unit :  A
Keywords :  Hand, Foot And Mouth Disease, 3C Proteinase, Peptidomimetics, Drug Design, Rupintrivir, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Wu, L. Zhang, P. Li, Q. Cai, X. Peng, K. Yin, X. Chen, H. Ren, S. Zhong, Y. Weng, Y. Guan, S. Chen, J. Wu, J. Li, T. Lin
Fragment-Wise Design Of Inhibitors To 3C Proteinase From Enterovirus 71
Biochim. Biophys. Acta V. 1860 1299 2016
PubMed-ID: 26987809  |  Reference-DOI: 10.1016/J.BBAGEN.2016.03.017

(-) Compounds

Molecule 1 - 3C PROTEINASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: ENTEROVIRUS A71
    Organism Taxid: 39054

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
15E91Ligand/IonETHYL (2Z,4S)-4-{[(2R,5S)-5-AMINO-2-(4-FLUOROBENZYL)-6-METHYL-4-OXOHEPTANOYL]AMINO}-5-[(3S)-2-OXOPYRROLIDIN-3-YL]PENT-2-ENOATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:22 , ARG A:39 , HIS A:40 , GLU A:71 , LEU A:127 , SER A:128 , LYS A:130 , THR A:142 , LYS A:143 , ALA A:144 , GLY A:145 , CYS A:147 , HIS A:161 , ILE A:162 , GLY A:163 , GLY A:164binding site for residue 5E9 A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DP5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DP5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DP5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DP5)

(-) Exons   (0, 0)

(no "Exon" information available for 5DP5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhheeeeee..eeeeeeeee..eeeee.hhh...eeee..eeeeeeeeeeee.....eeeeeeeee........hhhhh......eeeeeeee.......eeeeeeeeeeeeeeee..eeeeeeeee...........eeee..eeeeeeeee....eeeee.hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dp5 A   0 MGPSLDFALSLLRRNVRQVQTDQGHFTMLGVRDRLAVLPRHSQPGKTIWIEHKLVNILDAVELVDEQGVNLELTLITLDTNEKFRDITKFIPENISTASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVVTSVGKVIGIHIGGNGRQGFCAGLKRSYFA 180
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DP5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DP5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DP5)

(-) Gene Ontology  (37, 37)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A9XG43_9ENTO | A9XG43: 4fvb 4fvd 4ghq 4ght 5c1u 5c1x 5c1y 5c20 5dp3 5dp4 5dp6 5dp7 5dp8 5dp9 5dpa

(-) Related Entries Specified in the PDB File

5dp3 5dp4 5dp6 5dp7 5dp8 5dp9 5dpa