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(-) Description

Title :  CRYSTAL STRUCTURE OF EV71 3C PROTEINASE IN COMPLEX WITH COMPOUND VIII
 
Authors :  L. Zhang, G. Huang, Q. Cai, C. Zhao, H. Ren, P. Li, N. Li, S. Chen, J. Li, T. L
Date :  15 Jun 15  (Deposition) - 01 Jun 16  (Release) - 26 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.86
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hydrolase, Cysteine Proteinase, Inhibitor, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Zhang, G. Huang, Q. Cai, C. Zhao, L. Tang, H. Ren, P. Li, N. Li, J. Huang X. Chen, Y. Guan, H. You, S. Chen, J. Li, T. Lin
Optimize The Interactions At S4 With Efficient Inhibitors Targeting 3C Proteinase From Enterovirus 71
J. Mol. Recognit. V. 29 520 2016
PubMed-ID: 27185390  |  Reference-DOI: 10.1002/JMR.2551

(-) Compounds

Molecule 1 - 3C PROTEINASE
    Chains: A, B
    EC Number: 3.4.22.28
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: ENTEROVIRUS A71
    Organism Taxid: 39054
    Strain: E2004104-TW-CDC

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1GHX2Ligand/IonNALPHA-[(BENZYLOXY)CARBONYL]-N-{(2S)-1-OXO-3-[(3S)-2-OXOPYRROLIDIN-3-YL]PROPAN-2-YL}-L-PHENYLALANINAMIDE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1GHX1Ligand/IonNALPHA-[(BENZYLOXY)CARBONYL]-N-{(2S)-1-OXO-3-[(3S)-2-OXOPYRROLIDIN-3-YL]PROPAN-2-YL}-L-PHENYLALANINAMIDE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1GHX1Ligand/IonNALPHA-[(BENZYLOXY)CARBONYL]-N-{(2S)-1-OXO-3-[(3S)-2-OXOPYRROLIDIN-3-YL]PROPAN-2-YL}-L-PHENYLALANINAMIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:39 , HIS A:40 , GLU A:71 , LEU A:127 , SER A:128 , THR A:142 , LYS A:143 , CYS A:147 , HIS A:161 , ILE A:162 , GLY A:163 , GLY A:164binding site for residue GHX A 201
2AC2SOFTWARETHR B:26 , ARG B:39 , HIS B:40 , GLU B:71 , ASN B:126 , LEU B:127 , SER B:128 , THR B:142 , LYS B:143 , ALA B:144 , GLY B:145 , GLN B:146 , GLY B:148 , GLY B:149 , HIS B:161 , ILE B:162 , GLY B:163 , GLY B:164 , HOH B:350binding site for Di-peptide GHX B 201 and CYS B 147

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C1X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5C1X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C1X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5C1X)

(-) Exons   (0, 0)

(no "Exon" information available for 5C1X)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhheeeeee..eeeeeeeee..eeeee.hhh...eeee..eeeeeeeeeeee.....eeeeeeeee........hhhhh......eeeeeeee.......eeeeeeeeeeeeeeee..eeeeeeeee...........eeee..eeeeeeeee....eeeee.hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c1x A   0 MGPSLDFALSLLRRNVRQVQTDQGHFTMLGVRDRLAVLPRHSQPGKTIWIEHKLVNILDAVELVDEQGVNLELTLITLDTNEKFRDITKFIPENISTASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVVTSVGKVIGIHIGGNGRQGFCAGLKRSYFA 180
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179 


Chain B from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhheeeeee..eeeeeeeee..eeeee.hhh...eeee..eeeeeeeeeeee.....eeeeeeeee........hhhhh......eeeeeeee.......eeeeeeeeeeeeeeee..eeeeeeeee...........eeee..eeeeeeeee....eeeee.hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c1x B   0 MGPSLDFALSLLRRNVRQVQTDQGHFTMLGVRDRLAVLPRHSQPGKTIWIEHKLVNILDAVELVDEQGVNLELTLITLDTNEKFRDITKFIPENISTASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVVTSVGKVIGIHIGGNGRQGFCAGLKRSYFA 180
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C1X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C1X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C1X)

(-) Gene Ontology  (37, 37)

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  5c1x
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A9XG43_9ENTO | A9XG43: 4fvb 4fvd 4ghq 4ght 5c1u 5c1y 5c20 5dp3 5dp4 5dp5 5dp6 5dp7 5dp8 5dp9 5dpa

(-) Related Entries Specified in the PDB File

4ghq 4ght 5c1u 5c1y 5c20