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(-) Description

Title :  CRYSTAL STRUCTURE OF EV71 3C PROTEINASE IN COMPLEX WITH AG7088
 
Authors :  C. Chen, C. Wu, Q. Cai, N. Li, X. Peng, Y. Cai, K. Yin, X. Chen, X. Wang, R. Zh L. Liu, S. Chen, J. Li, T. Lin
Date :  08 Aug 12  (Deposition) - 26 Jun 13  (Release) - 26 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.96
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Hydrolase, Cysteine Proteinase, Inhibitor, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Wu, Q. Cai, C. Chen, N. Li, X. Peng, Y. Cai, K. Yin, X. Chen, X. Wang, R. Zhang, L. Liu, S. Chen, J. Li, T. Lin
Structures Of Enterovirus 71 3C Proteinase (Strain E2004104-Tw-Cdc) And Its Complex With Rupintrivir
Acta Crystallogr. , Sect. D V. 69 866 2013
PubMed-ID: 23633597  |  Reference-DOI: 10.1107/S0907444913002862

(-) Compounds

Molecule 1 - 3C PROTEINASE
    Chains: A, B
    EC Number: 3.4.22.28
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: HUMAN ENTEROVIRUS 71
    Organism Taxid: 39054
    Strain: E2004104-TW-CDC

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1AG72Ligand/Ion4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1AG71Ligand/Ion4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1AG71Ligand/Ion4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1AG72Ligand/Ion4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:39 , HIS A:40 , GLU A:71 , LEU A:125 , ASN A:126 , LEU A:127 , SER A:128 , LYS A:130 , THR A:142 , LYS A:143 , ALA A:144 , GLY A:145 , CYS A:147 , HIS A:161 , ILE A:162 , GLY A:163 , GLY A:164 , ASN A:165 , PHE A:170BINDING SITE FOR RESIDUE AG7 A 201
2AC2SOFTWAREGLU A:81 , GLN B:22 , ARG B:39 , HIS B:40 , GLU B:71 , LEU B:125 , ASN B:126 , LEU B:127 , SER B:128 , LYS B:130 , THR B:142 , LYS B:143 , ALA B:144 , GLY B:145 , CYS B:147 , HIS B:161 , ILE B:162 , GLY B:163 , GLY B:164 , ASN B:165 , PHE B:170BINDING SITE FOR RESIDUE AG7 B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GHT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GHT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GHT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GHT)

(-) Exons   (0, 0)

(no "Exon" information available for 4GHT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains d4ghta_ A: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhheeeeee..eeeeeeeee..eeeee.hhh...eeee..eeeeeeeeeeee.....eeeeeeeee........hhhhh......eeeeeeee.......eeeeeeeeeeeeeeee..eeeeeeeee...........eeee..eeeeeeeee....eeeee.hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ght A   0 MGPSLDFALSLLRRNVRQVQTDQGHFTMLGVRDRLAVLPRHSQPGKTIWIEHKLVNILDAVELVDEQGVNLELTLITLDTNEKFRDITKFIPENISTASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVVTSVGKVIGIHIGGNGRQGFCAGLKRSYFA 180
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179 


Chain B from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains d4ghtb_ B: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhheeeeee..eeeeeeeee..eeeee.hhh...eeee..eeeeeeeeeeee.....eeeeeeeee........hhhhh......eeeeeeee.......eeeeeeeeeeeeeeee..eeeeeeeee...........eeee..eeeeeeeee....eeeee.hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ght B   0 MGPSLDFALSLLRRNVRQVQTDQGHFTMLGVRDRLAVLPRHSQPGKTIWIEHKLVNILDAVELVDEQGVNLELTLITLDTNEKFRDITKFIPENISTASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVVTSVGKVIGIHIGGNGRQGFCAGLKRSYFA 180
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GHT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GHT)

(-) Gene Ontology  (37, 37)

Asymmetric Unit(hide GO term definitions)

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  4ght
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A9XG43_9ENTO | A9XG43: 4fvb 4fvd 4ghq 5c1u 5c1x 5c1y 5c20 5dp3 5dp4 5dp5 5dp6 5dp7 5dp8 5dp9 5dpa

(-) Related Entries Specified in the PDB File

4ghq 4ghv 4ghx 4ghy 4ghz