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(-) Description

Title :  CRYSTAL STRUCTURE OF FABP4 IN COMPLEX WITH 3-[5-CYCLOPROPYL-3-(3-METHOXYPYRIDIN-4-YL)-2-PHENYL-1H-INDOL-1-YL] PROPANOIC ACID
 
Authors :  U. Tagami, K. Takahashi, S. Igarashi, C. Ejima, T. Yoshida, S. Takeshit W. Miyanaga, M. Sugiki, M. Tokumasu, T. Hatanaka, T. Kashiwagi, K. Ish H. Miyano, T. Mizukoshi
Date :  07 Aug 15  (Deposition) - 22 Jun 16  (Release) - 22 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Fatty Acid Binding Protein, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. Tagami, K. Takahashi, S. Igarashi, C. Ejima, T. Yoshida, S. Takeshita, W. Miyanaga, M. Sugiki, M. Tokumasu, T. Hatanaka, T. Kashiwagi, K. Ishikawa, H. Miyano, T. Mizukoshi
Interaction Analysis Of Fabp4 Inhibitors By X-Ray Crystallography And Fragment Molecular Orbital Analysis
Acs Med. Chem. Lett. V. 7 435 2016
PubMed-ID: 27096055  |  Reference-DOI: 10.1021/ACSMEDCHEMLETT.6B00040

(-) Compounds

Molecule 1 - FATTY ACID-BINDING PROTEIN, ADIPOCYTE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FABP4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ADIPOCYTE LIPID-BINDING PROTEIN,ALBP,ADIPOCYTE-TYPE FATTY ACID-BINDING PROTEIN,AFABP,FATTY ACID-BINDING PROTEIN 4

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1L191Ligand/Ion3-[5-CYCLOPROPYL-3-(3-METHOXYPYRIDIN-4-YL)-2-PHENYL-1H-INDOL-1-YL]PROPANOIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:16 , MET A:20 , ALA A:33 , MET A:40 , SER A:53 , SER A:55 , LYS A:58 , ASP A:76 , ARG A:126 , TYR A:128 , HOH A:326binding site for residue L19 A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D47)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5D47)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D47)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D47)

(-) Exons   (0, 0)

(no "Exon" information available for 5D47)

(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh.eeeeeeeeehhhhhhhhhh.hhhhhhhhhhh..eeeeeee..eeeeeee....eeeeeee....eeee.....eeeeeeeee..eeeeeeee..eeeeeeeeee..eeeeeeee..eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d47 A  -3 GSHMCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVMKGVTSTRVYERA 131
                                     6        16        26        36        46        56        66        76        86        96       106       116       126
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D47)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D47)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D47)

(-) Gene Ontology  (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)

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  5d47
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  FABP4_HUMAN | P15090
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FABP4_HUMAN | P15090: 1tou 1tow 2hnx 2nnq 3fr2 3fr4 3fr5 3p6c 3p6d 3p6e 3p6f 3p6g 3p6h 3q6l 3rzy 4nns 4nnt 5d45 5d48 5d4a 5edb 5edc 5hz6 5hz8

(-) Related Entries Specified in the PDB File

5d45 5d48 5d4a