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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN GLYCOGEN BRANCHING ENZYME (GBE1) IN COMPLEX WITH MALTOHEPTAOSE
 
Authors :  T. Krojer, D. S. Froese, S. Goubin, C. Strain-Damerell, P. Mahajan, N. B Brown, F. Von Delft, C. Bountra, C. H. Arrowsmith, A. Edwards, W. Yue, Structural Genomics Consortium (Sgc)
Date :  16 Jul 15  (Deposition) - 07 Oct 15  (Release) - 07 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Transferase, Structural Genomics Consortium, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Krojer, D. S. Froese, S. Goubin, C. Strain-Damerell, P. Mahajan, N. Burgess-Brown, F. Von Delft, C. Bountra, C. H. Arrowsmith, A. Edwards, W. Yue, Structural Genomics Consortium (Sgc)
Crystal Structure Of Human Glycogen Branching Enzyme (Gbe1) In Complex With Maltoheptaose
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 1,4-ALPHA-GLUCAN-BRANCHING ENZYME
    Chains: A, B, C
    EC Number: 2.4.1.18
    Engineered: YES
    Expression System: UNIDENTIFIED BACULOVIRUS
    Expression System Plasmid: PFB-LIC-BSE
    Expression System Taxid: 10469
    Fragment: UNP RESIDUES 38-700
    Gene: GBE1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BRANCHER ENZYME,GLYCOGEN-BRANCHING ENZYME

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 22)

Asymmetric Unit (2, 22)
No.NameCountTypeFull Name
1GLC21Ligand/IonALPHA-D-GLUCOSE
2NA1Ligand/IonSODIUM ION
Biological Unit 1 (1, 7)
No.NameCountTypeFull Name
1GLC7Ligand/IonALPHA-D-GLUCOSE
2NA-1Ligand/IonSODIUM ION
Biological Unit 2 (1, 7)
No.NameCountTypeFull Name
1GLC7Ligand/IonALPHA-D-GLUCOSE
2NA-1Ligand/IonSODIUM ION
Biological Unit 3 (1, 7)
No.NameCountTypeFull Name
1GLC7Ligand/IonALPHA-D-GLUCOSE
2NA-1Ligand/IonSODIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO B:315 , ARG B:316 , ARG B:576binding site for residue NA B 1008
2AC2SOFTWAREASN A:62 , GLU A:63 , TRP A:91 , PRO A:93 , TYR A:119 , GLY A:120 , LYS A:121 , TRP A:332 , GLU A:333 , ARG A:336 , LYS C:115 , LYS C:116 , LEU C:117 , ASP C:118binding site for Poly-Saccharide residues GLC A 1001 through GLC A 1007
3AC3SOFTWAREASN A:62 , GLU A:63 , TRP A:91 , PRO A:93 , TYR A:119 , GLY A:120 , LYS A:121 , TRP A:332 , GLU A:333 , ARG A:336 , ASN B:62 , GLU B:63 , TRP B:91 , PRO B:93 , LYS B:115 , LYS B:116 , LEU B:117 , ASP B:118 , TYR B:119 , GLY B:120 , LYS B:121 , TRP B:332 , GLU B:333 , ARG B:336 , LYS C:115 , LYS C:116 , LEU C:117 , ASP C:118binding site for Poly-Saccharide residues GLC B 1001 through GLC B 1007
4AC4SOFTWARELYS A:115 , LYS A:116 , LEU A:117 , ASP A:118 , ASN B:62 , GLU B:63 , TRP B:91 , PRO B:93 , LYS B:115 , LYS B:116 , LEU B:117 , ASP B:118 , TYR B:119 , GLY B:120 , LYS B:121 , TRP B:332 , GLU B:333 , ARG B:336 , ASN C:62 , GLU C:63 , TRP C:91 , PRO C:93 , LYS C:116 , TYR C:119 , GLY C:120 , LYS C:121 , TRP C:332 , GLU C:333 , ARG C:336binding site for Poly-Saccharide residues GLC C 1001 through GLC C 1007

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CLW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CLW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CLW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CLW)

(-) Exons   (0, 0)

(no "Exon" information available for 5CLW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:637
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.eeee.....eeeeee.....eeeeee.hhh........ee....eeeeee..............eeeeeee.....eeee.......ee........eee....................eeeeeee...........hhhhhhhhhhhhhhhh...eeeee..eee.hhhhh...eeeeeee.hhhhhhhhhhhhhhhhhhh..eeeeeee...ee...................hhhh.ee....ee.....hhhhhhhhhhhhhhhhhh....eeeeehhhhhhh...hhhhhhhhhhhhhhhhhhh...eeee...........hhhhh.....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee....hhhhh....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh..eeeee..............hhhhh........hhhhhh....hhhhhhhhhhhhhhhhhhhh.......eeeeee....eeeeee..eeeeee......eeeeeeee...eeeeeeee..hhhhh..........eee.........eeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5clw A   43 VDFQRRYKQFSQILKNIGENEGGIDKFSRGYESFGVHRCADGGLYCKEWAPGAEGVFLTGDFNGWNPFSYPYKKLDYGKWELYIPPKQNKSVLVPHGSKLKVVITSKSGEILYRISPWAKYVVREGDNVNYDWIHWDPEHSYEFKHSRPKKPRSLRIYESHVGISSHEGKVASYKHFTCNVLPRIKGLGYNCIQLMAIMEHAYYASFGYQITSFFAASSRYGSPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGLNMFDGTDSCYFHSGPRGTHDLWDSRLFAYSSWEVLRFLLSNIRWWLEEYRFDGFRFDGVTSMLYHQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPALCSPISQGGGGFDYRLAMAIPDKWIQLLKEFKDEDWNMGDIVYTLTNREKCIAYAESHDQALVGDKSLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHGLGGEGYLNFMGNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNRLEERYGWLAAPQAYVSEKHEGNKIIAFERAGLLFIFNFHPSKSYTDYRVGTALPGKFKIVLDSDAAEYGGHQRLDHSTDFFSEAFEHNGRPYSLLVYIPSRVALILQNVDL  700
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362  ||   390       400       410       420       430       440       450       460      |473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       
                                                                                                                                                                                                                                                                                                                                                            365|                                                                                467|                                                                                                                                                                                                                                     
                                                                                                                                                                                                                                                                                                                                                             384                                                                                 471                                                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:645
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.eeee.....eeeeee.....eeeeee.hhh........ee....eeeeee..............eeeeeee.....eeee.......ee........eee....................eeeeeee...........hhhhhhhhhhhhhhhh...eeeee..eee.hhhhh...eeeeeee.hhhhhhhhhhhhhhhhhhh..eeeeeee...ee....................hhh.ee....ee.....hhhhhhhhhhhhhhhhhh....eeeeehhhhhhhh.........hhhhhhhhhhhhhhhhhhh...eeee...........hhhhh.....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee....hhhhh....hhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh..eeeee..............hhhhh........hhhhhh....hhhhhhhhhhhhhhhhhhhh.......eeeeee....eeeeee..eeeeee......eeeeeeee...eeeeeeee..hhhhh..........eee.........eeeeeee...eeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5clw B   44 DFQRRYKQFSQILKNIGENEGGIDKFSRGYESFGVHRCADGGLYCKEWAPGAEGVFLTGDFNGWNPFSYPYKKLDYGKWELYIPPKQNKSVLVPHGSKLKVVITSKSGEILYRISPWAKYVVREGDNVNYDWIHWDPEHSYEFKHSRPKKPRSLRIYESHVGISSHEGKVASYKHFTCNVLPRIKGLGYNCIQLMAIMEHAYYASFGYQITSFFAASSRYGSPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGLNMFDGTDSCYFHSGPRGTHDLWDSRLFAYSSWEVLRFLLSNIRWWLEEYRFDGFRFDGVTSMLYHHHEYFGLQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPALCSPISQGGGGFDYRLAMAIPDKWIQLLKEFKDEDWNMGDIVYTLTNRRYLEKCIAYAESHDQALVGDKSLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHGLGGEGYLNFMGNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNRLEERYGWLAAPQAYVSEKHEGNKIIAFERAGLLFIFNFHPSKSYTDYRVGTALPGKFKIVLDSDAAEYGGHQRLDHSTDFFSEAFEHNGRPYSLLVYIPSRVALILQNVD  699
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363   ||  384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694     
                                                                                                                                                                                                                                                                                                                                                             367|                                                                                          473A                                                                                                                                                                                                                                  
                                                                                                                                                                                                                                                                                                                                                              379                                                                                                                                                                                                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:637
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.hhhhhhhhhhh.eeee.....eeeeee.....eeeeee.hhh........ee....eeeeee..............eeeeeee.....eeee.......ee........eee....................eeeeeee...........hhhhhhhhhhhhhhhh...eeeee..eee.hhhhh...eeeeeee.hhhhhhhhhhhhhhhhhhh..eeeeeee...ee....................hhh.ee....ee.....hhhhhhhhhhhhhhhhhh....eeeeehhhhhhh....hhhhhhhhhhhhhhhhhhh...eeee...........hhhhh.....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee....hhhhh....hhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhh........hhhhh........hhhhhh....hhhhhhhhhhhhhhhhhhhh.......eeeeee....eeeeee..eeeeee......eeeeeeee...eeeeeeee..hhhhh..........eee.........eeeeeee...eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5clw C   46 QRRYKQFSQILKNIGENEGGIDKFSRGYESFGVHRCADGGLYCKEWAPGAEGVFLTGDFNGWNPFSYPYKKLDYGKWELYIPPKQNKSVLVPHGSKLKVVITSKSGEILYRISPWAKYVVREGDNVNYDWIHWDPEHSYEFKHSRPKKPRSLRIYESHVGISSHEGKVASYKHFTCNVLPRIKGLGYNCIQLMAIMEHAYYASFGYQITSFFAASSRYGSPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGLNMFDGTDSCYFHSGPRGTHDLWDSRLFAYSSWEVLRFLLSNIRWWLEEYRFDGFRFDGVTSMLYHLQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPALCSPISQGGGGFDYRLAMAIPDKWIQLLKEFKDEDWNMGDIVYTLTNRRYLEKCIAYAESHDQALVGDKSLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHGLGGEGYLNFMGNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNRLEERYGWLAAPQAYVSEKHEGNKIIAFERAGLLFIFNFHPSKSYTDYRVGTALPGKFKIVLDSDAAEYGGHQRLDHSTDFFSEAFEHNGRPYSLLVYIPSRVALILQNVD  699
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365|      392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       
                                                                                                                                                                                                                                                                                                                                                         365|                                                                                                                                                                                                                                                                                                                            
                                                                                                                                                                                                                                                                                                                                                          383
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CLW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CLW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CLW)

(-) Gene Ontology  (12, 12)

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        GLGB_HUMAN | Q04446: 4bzy 5clt

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