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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN GLYCOGEN BRANCHING ENZYME (GBE1) IN COMPLEX WITH ACARBOSE
 
Authors :  T. Krojer, D. S. Froese, S. Goubin, C. Strain-Damerell, P. Mahajan, N. B Brown, F. Von Delft, C. Bountra, C. H. Arrowsmith, A. Edwards, W. Yue, Structural Genomics Consortium (Sgc)
Date :  16 Jul 15  (Deposition) - 12 Aug 15  (Release) - 12 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.79
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Structural Genomics, Structural Genomics Consortium, Sgc, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Krojer, D. S. Froese, S. Goubin, C. Strain-Damerell, P. Mahajan, N. Burgess-Brown, F. Von Delft, C. Bountra, C. H. Arrowsmith, A. Edwards, W. Yue, Structural Genomics Consortium (Sgc)
Crystal Structure Of Human Glycogen Branching Enzyme (Gbe1) In Complex With Acarbose
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 1,4-ALPHA-GLUCAN-BRANCHING ENZYME
    Chains: A, B, C
    EC Number: 2.4.1.18
    Engineered: YES
    Expression System: UNIDENTIFIED BACULOVIRUS
    Expression System Plasmid: PFB-LIC-BSE
    Expression System Taxid: 10469
    Fragment: RESIDUES 38-700
    Gene: GBE1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BRANCHER ENZYME,GLYCOGEN-BRANCHING ENZYME

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1ACR3Ligand/IonALPHA-ACARBOSE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ACR1Ligand/IonALPHA-ACARBOSE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ACR1Ligand/IonALPHA-ACARBOSE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1ACR1Ligand/IonALPHA-ACARBOSE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:62 , GLU A:63 , TRP A:91 , PRO A:93 , TYR A:119 , GLY A:120 , LYS A:121 , TRP A:332 , GLU A:333 , ARG A:336binding site for residue ACR A 1000
2AC2SOFTWAREASN B:62 , GLU B:63 , TRP B:91 , PRO B:93 , TYR B:119 , GLY B:120 , LYS B:121 , TRP B:332 , GLU B:333 , ARG B:336binding site for residue ACR B 1000
3AC3SOFTWAREASN C:62 , GLU C:63 , TRP C:91 , PRO C:93 , TYR C:119 , GLY C:120 , LYS C:121 , TRP C:332 , GLU C:333 , ARG C:336binding site for residue ACR C 1000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CLT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CLT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CLT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CLT)

(-) Exons   (0, 0)

(no "Exon" information available for 5CLT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:646
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee.....eeeeee.....eeeeee.hhh........ee....eeeeee..............eeeeeee.....eeee.......ee........eee....................eeeeeee...........hhhhhhhhhhhhhhhh...eeeee..eee.hhhhh...eeeeeee.hhhhhhhhhhhhhhhhhhh..eeeeee....ee....................hhh.ee....ee.....hhhhhhhhhhhhhhhhhhh...eeee.hhhhhhhh..........hhhhhhhhhhhhhhhhhhh...eeee...........hhhhh.....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee...hhhhhh....hhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhh........hhhhh........hhhhhhh...hhhhhhhhhhhhhhhhhhhh.......eeeeee....eeeeee..eeeeee......eeeeeeee...eeeeeeee..hhhhh..........eee.........eeeeeee...eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5clt A  44 DFQRRYKQFSQILKNIGENEGGIDKFSRGYESFGVHRCADGGLYCKEWAPGAEGVFLTGDFNGWNPFSYPYKKLDYGKWELYIPPKQNKSVLVPHGSKLKVVITSKSGEILYRISPWAKYVVREGDNVNYDWIHWDPEHSYEFKHSRPKKPRSLRIYESHVGISSHEGKVASYKHFTCNVLPRIKGLGYNCIQLMAIMEHAYYASFGYQITSFFAASSRYGSPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGLNMFDGTDSCYFHSGPRGTHDLWDSRLFAYSSWEVLRFLLSNIRWWLEEYRFDGFRFDGVTSMLYHHHSEYFGLQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPALCSPISQGGGGFDYRLAMAIPDKWIQLLKEFKDEDWNMGDIVYTLTNRRYLEKCIAYAESHDQALVGDKSLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHGLGGEGYLNFMGNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNRLEERYGWLAAPQAYVSEKHEGNKIIAFERAGLLFIFNFHPSKSYTDYRVGTALPGKFKIVLDSDAAEYGGHQRLDHSTDFFSEAFEHNGRPYSLLVYIPSRVALILQNVD 699
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363   ||  383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693      
                                                                                                                                                                                                                                                                                                                                                             367|                                                                                                                                                                                                                                                                                                                                 
                                                                                                                                                                                                                                                                                                                                                              378                                                                                                                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:637
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee.....eeeeee.....eeeeee.hhh........ee....eeeeee..............eeeeeee.....eeee.......ee........eee....................eeeeeee...........hhhhhhhhhhhhhhhh...eeeee..ee..hhhhh.....eeeee.hhhhhhhhhhhhhhhhhhh..eeeeeee.............................ee....ee.....hhhhhhhhhhhhhhhhhh....eeeeehhhhhhh...hhhhhhhhhhhhhhhhhhh...eeee...........hhhhh.....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.....hhhhh....hhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhh........hhhhh........hhhhhh....hhhhhhhhhhhhhhhhhhhh.......eeeeee....eeeeee..eeeeee......eeeeeeee...eeeeeeee..hhhhh..........eeeeeeee..eeeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5clt B  43 VDFQRRYKQFSQILKNIGENEGGIDKFSRGYESFGVHRCADGGLYCKEWAPGAEGVFLTGDFNGWNPFSYPYKKLDYGKWELYIPPKQNKSVLVPHGSKLKVVITSKSGEILYRISPWAKYVVREGDNVNYDWIHWDPEHSYEFKHSRPKKPRSLRIYESHVGISSHEGKVASYKHFTCNVLPRIKGLGYNCIQLMAIMEHAYYASFGYQITSFFAASSRYGSPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGLNMFDGTDSCYFHSGPRGTHDLWDSRLFAYSSWEVLRFLLSNIRWWLEEYRFDGFRFDGVTSMLYHQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPALCSPISQGGGGFDYRLAMAIPDKWIQLLKEFKDEDWNMGDIVYTLTNREKCIAYAESHDQALVGDKSLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHGLGGEGYLNFMGNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNRLEERYGWLAAPQAYVSEKHEGNKIIAFERAGLLFIFNFHPSKSYTDYRVGTALPGKFKIVLDSDAAEYGGHQRLDHSTDFFSEAFEHNGRPYSLLVYIPSRVALILQNVDL 700
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362  ||   390       400       410       420       430       440       450       460      |473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       
                                                                                                                                                                                                                                                                                                                                                            365|                                                                                467|                                                                                                                                                                                                                                     
                                                                                                                                                                                                                                                                                                                                                             384                                                                                 471                                                                                                                                                                                                                                     


Chain C from PDB  Type:PROTEIN  Length:637
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.eeee.....eeeeee.....eeeeee.hhh........ee....eeeeee..............eeeeeee.....eeee.......ee........eee....................eeeeeee...........hhhhhhhhhhhhhhhhh..eeeee..ee..hhhhh.....eeeee.hhhhhhhhhhhhhhhhhhh..eeeeeee.............................ee....ee.....hhhhhhhhhhhhhhhhhh....eeeeehhhhhhh...hhhhhhhhhhhhhhhhhhh...eeee...........hhhhh.....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee..hhhhhh....hhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhh........hhhhh........hhhhhhh...hhhhhhhhhhhhhhhhhhhh.......eeeeee....eeeeee..eeeeee......eeeeeeee...eeeeeeee..hhhhh..........eee.........eeeeeee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5clt C  45 FQRRYKQFSQILKNIGENEGGIDKFSRGYESFGVHRCADGGLYCKEWAPGAEGVFLTGDFNGWNPFSYPYKKLDYGKWELYIPPKQNKSVLVPHGSKLKVVITSKSGEILYRISPWAKYVVREGDNVNYDWIHWDPEHSYEFKHSRPKKPRSLRIYESHVGISSHEGKVASYKHFTCNVLPRIKGLGYNCIQLMAIMEHAYYASFGYQITSFFAASSRYGSPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGLNMFDGTDSCYFHSGPRGTHDLWDSRLFAYSSWEVLRFLLSNIRWWLEEYRFDGFRFDGVTSMLYHQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPALCSPISQGGGGFDYRLAMAIPDKWIQLLKEFKDEDWNMGDIVYTLTNRRYLEKCIAYAESHDQALVGDKSLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHGLGGEGYLNFMGNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNRLEERYGWLAAPQAYVSEKHEGNKIIAFERAGLLFIFNFHPSKSYTDYRVGTALPGKFKIVLDSDAAEYGGHQRLDHSTDFFSEAFEHNGRPYSLLVYIPSRVALILQNVD 699
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364||     392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       
                                                                                                                                                                                                                                                                                                                                                          365|                                                                                                                                                                                                                                                                                                                           
                                                                                                                                                                                                                                                                                                                                                           384
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CLT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CLT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CLT)

(-) Gene Ontology  (12, 12)

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  5clt
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        GLGB_HUMAN | Q04446: 4bzy 5clw

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