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(-) Description

Title :  CRYSTAL STRUCTURE OF ANEMONE STING (NEMATOSTELLA VECTENSIS) IN COMPLEX WITH 2',3' CGAMP, C[G(2',5')PA(3',5')P]
 
Authors :  P. J. Kranzusch, S. C. Wilson, A. S. Y. Lee, J. M. Berger, J. A. Doudna, R. E
Date :  08 Jul 15  (Deposition) - 26 Aug 15  (Release) - 30 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Sting, Cyclic-Dinucleotide Binding Domain, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Kranzusch, S. C. Wilson, A. S. Lee, J. M. Berger, J. A. Doudna, R. E. Vance
Ancient Origin Of Cgas-Sting Reveals Mechanism Of Universal 2', 3' Cgamp Signaling.
Mol. Cell V. 59 891 2015
PubMed-ID: 26300263  |  Reference-DOI: 10.1016/J.MOLCEL.2015.07.022

(-) Compounds

Molecule 1 - STIMULATOR OF INTERFERON GENES
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 193-377
    Gene: V1G246111
    Organism Common: STARLET SEA ANEMONE
    Organism Scientific: NEMATOSTELLA VECTENSIS
    Organism Taxid: 45351
    Synonym: PREDICTED PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
11SY1Ligand/IonCGAMP
2SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:321 , GLU A:322 , HIS B:279binding site for residue SO4 A 401
2AC2SOFTWARESER A:201 , TYR A:202 , GLY A:205 , TYR A:206 , ARG A:272 , ARG A:278 , HIS A:279 , TYR A:280 , GLU A:300 , THR A:303 , PRO A:304 , HOH A:502 , HOH A:515 , HOH A:517 , SER B:201 , TYR B:202 , GLY B:205 , TYR B:206 , ARG B:272 , ARG B:278 , HIS B:279 , TYR B:280 , GLU B:300 , THR B:303 , PRO B:304 , HOH B:508 , HOH B:510 , HOH B:515 , HOH B:516binding site for residue 1SY B 401
3AC3SOFTWAREARG A:321 , ARG A:324 , ARG B:321 , ARG B:324binding site for residue SO4 B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CFQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CFQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CFQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CFQ)

(-) Exons   (0, 0)

(no "Exon" information available for 5CFQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh...eeeeeeeeee...................eeeeee...eeeee..eeeeee..eeeee.......eeeeeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5cfq A 193 NVADGLAWSYYFGYLKFVLPELEKQIEKTSKFRSKEKFVKKMFILIPSNCFWDDKIPGSDYDPQNRITFEGNTEPLEKTRGGVFLRHYKHSVYEIKDGENEPWFCIMEYATPLLTLYDMSVAQPGELSREERDAQVVVFLRKLQDILEGDRACQGKYELVTFSPDRDLADVMLRKLKDSE 372
                                   202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372


Chain B from PDB  Type:PROTEIN  Length:179
                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhh...eeeeeeeeee...................eeeeee...eeeee..eeeeee..eeeee.......eeeeeee.hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cfq B 193 NVADGLAWSYYFGYLKFVLPELEKQIEKTSKFRSKEKFVKKMFILIPSNCFWDDKIPGSDYDPQNRITFEGNTEPLEKTRGGVFLRHYKHSVYEIKDGENEPWFCIMEYATPLLTLYDMSVAQPGELSREERDAQVVVFLRKLQDILEGDRACQGKYELVTFSPDRDLADVMLRKLKDS 371
                                   202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CFQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CFQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CFQ)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STING_NEMVE | A7SLZ2: 5cfl 5cfm 5cfn 5cfo 5cfp 5cfr

(-) Related Entries Specified in the PDB File

5cfl 5cfm 5cfn 5cfo 5cfp 5cfr