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(-) Description

Title :  CRYSTAL STRUCTURE OF ANEMONE STING (NEMATOSTELLA VECTENSIS) IN APO 'UNROTATED' CLOSED CONFORMATION
 
Authors :  P. J. Kranzusch, S. C. Wilson, A. S. Y. Lee, J. M. Berger, J. A. Doudna, R. E
Date :  08 Jul 15  (Deposition) - 26 Aug 15  (Release) - 30 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Sting, Cyclic-Dinucleotide Binding Domain, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Kranzusch, S. C. Wilson, A. S. Lee, J. M. Berger, J. A. Doudna, R. E. Vance
Ancient Origin Of Cgas-Sting Reveals Mechanism Of Universal 2', 3' Cgamp Signaling.
Mol. Cell V. 59 891 2015
PubMed-ID: 26300263  |  Reference-DOI: 10.1016/J.MOLCEL.2015.07.022

(-) Compounds

Molecule 1 - STIMULATOR OF INTERFERON GENES
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 178-377
    Gene: V1G246111
    Organism Common: STARLET SEA ANEMONE
    Organism Scientific: NEMATOSTELLA VECTENSIS
    Organism Taxid: 45351
    Synonym: PREDICTED PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:226 , GLN A:256 , ASP A:337binding site for residue CA A 401
2AC2SOFTWAREASP A:254 , ASN A:257 , ILE A:259binding site for residue CA A 402
3AC3SOFTWAREASP B:254 , ASN B:257 , ILE B:259binding site for residue CA B 401
4AC4SOFTWARESER B:226 , GLN B:256 , ASP B:337binding site for residue CA B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CFR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CFR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CFR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CFR)

(-) Exons   (0, 0)

(no "Exon" information available for 5CFR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh....eeeeeeeeee...........eeeeee.....eee...eee....eeeee.......eeeeeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh........eeeeee....hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cfr A 192 KNVADGLAWSYYFGYLKFVLPELEKQIEKTSKFRSKEKFVKKMFILIPSNCFDYDPQNRITFEGNTEPLEKTRGGVFLRHYKHSVYEIKDGENEPWFCIMEYATPLLTLYDMSVAQPGELSREERDAQVVVFLRKLQDILEGDRACQGKYELVTFSPDRDLADVMLRKLKDS 371
                                   201       211       221       231       241 ||    259       269       279       289       299       309       319       329       339       349       359       369  
                                                                             243|                                                                                                                       
                                                                              252                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh....eeeeeeeeee...........eeeeee.....eee...eee....eeeee.......eeeeeeehhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh........eeeeee....hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cfr B 192 KNVADGLAWSYYFGYLKFVLPELEKQIEKTSKFRSKEKFVKKMFILIPSNCFDYDPQNRITFEGNTEPLEKTRGGVFLRHYKHSVYEIKDGENEPWFCIMEYATPLLTLYDMSVAQPGELSREERDAQVVVFLRKLQDILEGDRACQGKYELVTFSPDRDLADVMLRKLKDS 371
                                   201       211       221       231       241 ||    259       269       279       289       299       309       319       329       339       349       359       369  
                                                                             243|                                                                                                                       
                                                                              252
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CFR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CFR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CFR)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STING_NEMVE | A7SLZ2: 5cfl 5cfm 5cfn 5cfo 5cfp 5cfq

(-) Related Entries Specified in the PDB File

5cfl 5cfm 5cfn 5cfo 5cfp 5cfq