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(-) Description

Title :  CRYSTAL STRUCTURE OF ANEMONE STING (NEMATOSTELLA VECTENSIS) IN COMPLEX WITH 3',3' C-DI-AMP, C[A(3',5')PA(3',5')P]
 
Authors :  P. J. Kranzusch, S. C. Wilson, A. S. Y. Lee, J. M. Berger, J. A. Doudna, R. E
Date :  08 Jul 15  (Deposition) - 26 Aug 15  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.95
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Sting, Cyclic-Dinucleotide Binding Domain, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Kranzusch, S. C. Wilson, A. S. Lee, J. M. Berger, J. A. Doudna, R. E. Vance
Ancient Origin Of Cgas-Sting Reveals Mechanism Of Universal 2', 3' Cgamp Signaling.
Mol. Cell V. 59 891 2015
PubMed-ID: 26300263  |  Reference-DOI: 10.1016/J.MOLCEL.2015.07.022

(-) Compounds

Molecule 1 - STIMULATOR OF INTERFERON GENES
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 193-377
    Gene: V1G246111
    Organism Common: STARLET SEA ANEMONE
    Organism Scientific: NEMATOSTELLA VECTENSIS
    Organism Taxid: 45351
    Synonym: PREDICTED PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
12BA2Ligand/Ion(2R,3R,3AS,5R,7AR,9R,10R,10AS,12R,14AR)-2,9-BIS(6-AMINO-9H-PURIN-9-YL)OCTAHYDRO-2H,7H-DIFURO[3,2-D:3',2'-J][1,3,7,9,2,8]TETRAOXADIPHOSPHACYCLODODECINE-3,5,10,12-TETROL 5,12-DIOXIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:201 , GLY A:205 , TYR A:206 , ARG A:278 , TYR A:280 , THR A:303 , PRO A:304 , 2BA A:402 , TYR B:202 , GLY B:205 , TYR B:206 , ARG B:278 , TYR B:280 , THR B:303 , PRO B:304binding site for residue 2BA A 401
2AC2SOFTWAREARG A:278 , HIS A:279 , THR A:303 , 2BA A:401 , ARG B:278 , HIS B:279 , THR B:303binding site for residue 2BA A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CFN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CFN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CFN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CFN)

(-) Exons   (0, 0)

(no "Exon" information available for 5CFN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhh..eeeeeeeeee...................eeeeee...eeee.....eeee..eeeeeee..eeeeeeeeee.hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......eeeeee....hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cfn A 192 SNVADGLAWSYYFGYLKFVLPELEKQIEKTSKFRSKEKFVKKMFILIPSNCFWDDKIPGSDYDPQNRITFEGNTEPLEKTRGGVFLRHYKHSVYEIKDGENEPWFCIMEYATPLLTLYDMSVAQPGELSREERDAQVVVFLRKLQDILEGDRACQGKYELVTFSPDRDLADVMLRKLKDSE 372
                                   201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371 


Chain B from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhh..eeeeeeeeee...................eeeeee...eeeee...eeeee..eeeeeee..eeeeeeeeee.hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......eeeeee....hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5cfn B 192 SNVADGLAWSYYFGYLKFVLPELEKQIEKTSKFRSKEKFVKKMFILIPSNCFWDDKIPGSDYDPQNRITFEGNTEPLEKTRGGVFLRHYKHSVYEIKDGENEPWFCIMEYATPLLTLYDMSVAQPGELSREERDAQVVVFLRKLQDILEGDRACQGKYELVTFSPDRDLADVMLRKLKDS 371
                                   201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CFN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CFN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CFN)

(-) Gene Ontology  (9, 9)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STING_NEMVE | A7SLZ2: 5cfl 5cfm 5cfo 5cfp 5cfq 5cfr

(-) Related Entries Specified in the PDB File

5cfl 5cfm 5cfo 5cfp 5cfq 5cfr