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(-) Description

Title :  SKI-LIKE PROTEIN
 
Authors :  K. Wallden, T. Nyman, B. M. Hallberg
Date :  18 Jun 15  (Deposition) - 12 Oct 16  (Release) - 19 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Complex, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Wallden, T. Nyman, B. M. Hallberg
Snon Stabilizes The Smad3/Smad4 Protein Complex.
Sci Rep V. 7 46370 2017
PubMed-ID: 28397834  |  Reference-DOI: 10.1038/SREP46370

(-) Compounds

Molecule 1 - MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 4
    Chains: A, C, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: KRX
    Expression System Taxid: 562
    Expression System Vector Type: PNIC28BSA4
    Fragment: RESIDUES 314-549
    Gene: SMAD4, DPC4, MADH4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MOTHERS AGAINST DPP HOMOLOG 4,DELETION TARGET IN PANCREATIC CARCINOMA 4,SMAD FAMILY MEMBER 4,HSMAD4
 
Molecule 2 - SKI-LIKE PROTEIN
    Chains: B, D, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: KRX
    Expression System Taxid: 562
    Expression System Vector Type: PNICCH2
    Fragment: RESIDUES 238-356
    Gene: SKIL, SNO
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SKI-RELATED ONCOGENE,SKI-RELATED PROTEIN

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2NI2Ligand/IonNICKEL (II) ION
3ZN3Ligand/IonZINC ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2NI-1Ligand/IonNICKEL (II) ION
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2NI-1Ligand/IonNICKEL (II) ION
3ZN-1Ligand/IonZINC ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2NI-1Ligand/IonNICKEL (II) ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:336 , SER A:368 , ASN A:369 , HOH A:703 , HOH A:717 , GLN E:334binding site for residue GOL A 601
2AC2SOFTWARECYS B:291 , CYS B:294 , HIS B:306 , HIS B:308binding site for residue ZN B 401
3AC3SOFTWAREHIS B:308 , SER F:307 , HIS F:308binding site for residue NI B 402
4AC4SOFTWAREHIS B:306 , SER B:307binding site for residue NI B 403
5AC5SOFTWARECYS D:291 , CYS D:294 , HIS D:306 , HIS D:308binding site for residue ZN D 401
6AC6SOFTWARECYS F:291 , CYS F:294 , HIS F:306 , HIS F:308binding site for residue ZN F 401

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1B:291 -B:294

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Pro A:511 -Asp A:512
2Asp F:312 -Lys F:313

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C4V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5C4V)

(-) Exons   (0, 0)

(no "Exon" information available for 5C4V)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeee..ee....eeee....eeeee.........eee.........hhhhhhhhh.....eeeeee...eeeee......eeeehhhhhhhh.......eeee....eeeeehhhhhhhhhhhhhhhhhhhhh.hhhhhh..eeeeee...........hhhhh..eeeeeehhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5c4v A 319 APEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAGVDDLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLH 541
                                   328       338       348       358       368       378       388       398       408       418       428       438       448       458||     499       509       519       529       539  
                                                                                                                                                                      459|                                                  
                                                                                                                                                                       491                                                  


Chain B from PDB  Type:PROTEIN  Length:96
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee.....eeeee.hhhh.......eee.....eehhhhhh..........eeee..hhhhhhhhhee........hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 5c4v B 259 GSAFEVEHECLGKCQGLFAPQFYVQPDAPCIQCLECCGMFAPQTFVMHSHRSPDKRTCHWGFESAKWHCYLHVNQKYLGTPEEKKLKIILEEMKEK 354
                                   268       278       288       298       308       318       328       338       348      


Chain C from PDB  Type:PROTEIN  Length:188
                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee..ee....eeee....eeeee.........eee.........hhhhhhhhh.....eeeeee...eeeee......eeeehhhhhhhh.......eeee....eeeeehhhhhhhhhhhhhhh...hhhhh..eeeeee...........hhhhh..eeeeeehhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c4v C 319 APEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQVDDLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHT 542
                                   328       338       348       358       368       378       388       398       408       418       428       438       448      |494       504       514       524       534        
                                                                                                                                                                  455|                                                  
                                                                                                                                                                   492                                                  


Chain D from PDB  Type:PROTEIN  Length:91
                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....eeeee.hhhh.......eee.....eehhhhhh..........eeee..hhhhhhhhhee........hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 5c4v D 262 FEVEHECLGKCQGLFAPQFYVQPDAPCIQCLECCGMFAPQTFVMHSHRSPDKRTCHWGFESAKWHCYLHVNQKYLGTPEEKKLKIILEEMK 352
                                   271       281       291       301       311       321       331       341       351 


Chain E from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee..ee....eeee....eeeee.........eee.........hhhhhhhhhh....eeeeee...eeeee......eeeehhhhhhhh.......eeee....eeeeehhhhhhhhhhhhhhhhhhhhhh....hhhhhh.eeeeee...........hhhhh..eeeeeehhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c4v E 319 APEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAQAAVDDLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHT 542
                                   328       338       348       358       368       378       388       398       408       418       428       438       448       458    || 496       506       516       526       536      
                                                                                                                                                                          463|                                                  
                                                                                                                                                                           492                                                  


Chain F from PDB  Type:PROTEIN  Length:93
                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....eeeee.hhhh.......eee.....eehhhhhh..........eeee..hhhhhhhhhee........hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 5c4v F 262 FEVEHECLGKCQGLFAPQFYVQPDAPCIQCLECCGMFAPQTFVMHSHRSPDKRTCHWGFESAKWHCYLHVNQKYLGTPEEKKLKIILEEMKEK 354
                                   271       281       291       301       311       321       331       341       351
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C4V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C4V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C4V)

(-) Gene Ontology  (130, 140)

Asymmetric Unit(hide GO term definitions)

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  5c4v
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  SMAD4_HUMAN | Q13485
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SKIL_HUMAN | P12757: 3eq5
        SMAD4_HUMAN | Q13485: 1dd1 1g88 1mr1 1u7f 1u7v 1ygs 5uwu

(-) Related Entries Specified in the PDB File

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