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(-) Description

Title :  CRYSTAL STRUCTURE OF FRAGMENT 137 TO 238 OF THE HUMAN SKI-LIKE PROTEIN
 
Authors :  L. Tresaugues, M. Wisniewska, J. Andersson, C. H. Arrowsmith, H. Bergl C. Bountra, R. Collins, L. G. Dahlgren, A. M. Edwards, S. Flodin, A. Flo S. Graslund, M. Hammarstrom, A. Johansson, I. Johansson, T. Karlberg T. Kotenyova, L. Lehtio, M. Moche, M. E. Nilsson, T. Nyman, K. Olesen, C J. Sagemark, H. Schueler, A. G. Thorsell, S. Van Den Berg, M. Welin, M. Wikstrom, J. Weigelt, P. Nordlund, Structural Genomics Consort
Date :  30 Sep 08  (Deposition) - 27 Jan 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Biol. Unit 9:  I  (1x)
Biol. Unit 10:  J  (1x)
Biol. Unit 11:  K  (1x)
Biol. Unit 12:  L  (1x)
Keywords :  Skil, Ski-Like Protein, Sno, Receptor Signalling, Tgf-Beta, Signaling Protein, Structural Genomics, Sgc Stockholm, Structural Genomics Consortium, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. Tresaugues, M. Wisniewska, J. Andersson, C. H. Arrowsmith, H. Berglund, C. Bountra, R. Collins, L. G. Dahlgren, A. M. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, A. Johansson, I. Johansson, T. Karlberg, T. Kotenyova, L. Lehtio, M. Moche, M. E. Nilsson, T. Nyman, K. Olesen, C. Persson, J. Sagemark, H. Schueler, A. G. Thorsell, S. Van Den Berg, M. Welin, M. Wikstrom, J. Weigelt, P. Nordlund
Crystal Structure Of Fragment 137 To 238 Of The Human Ski-Like Protein.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SKI-LIKE PROTEIN
    ChainsA, B, C, D, E, F, G, H, I, J, K, L
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPNIC-BSA4
    Expression System StrainBL21(DE3) R3 PRARE
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 137-238
    GeneSKIL
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymSKI-RELATED PROTEIN, SKI-RELATED ONCOGENE

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit ABCDEFGHIJKL
Biological Unit 1 (1x)A           
Biological Unit 2 (1x) B          
Biological Unit 3 (1x)  C         
Biological Unit 4 (1x)   D        
Biological Unit 5 (1x)    E       
Biological Unit 6 (1x)     F      
Biological Unit 7 (1x)      G     
Biological Unit 8 (1x)       H    
Biological Unit 9 (1x)        I   
Biological Unit 10 (1x)         J  
Biological Unit 11 (1x)          K 
Biological Unit 12 (1x)           L

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3EQ5)

(-) Sites  (0, 0)

(no "Site" information available for 3EQ5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3EQ5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3EQ5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3EQ5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3EQ5)

(-) Exons   (0, 0)

(no "Exon" information available for 3EQ5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:102
 aligned with SKIL_HUMAN | P12757 from UniProtKB/Swiss-Prot  Length:684

    Alignment length:122
                                   124       134       144       154       164       174       184       194       204       214       224       234  
           SKIL_HUMAN   115 SMSPTVFLPLPSPQVLPGPLLIPSDSSTELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRP 236
               SCOP domains d3                    eq5a_ A: automated matches                                                                           SCOP domains
               CATH domains 3e                    q5A00 A:135-236 Putative DNA-binding domain                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .h--------------------hhhh....eeeee..eeeeeeee..eeeeehhhhhhh.....hhhhhhhhhhhhh...ee.hhhhhhhhhhh..........eeeehhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 3eq5 A 135 SM--------------------PSDSSTELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRP 236
                             |       -         -  |    144       154       164       174       184       194       204       214       224       234  
                             |                  137                                                                                                   
                           136                                                                                                                        

Chain B from PDB  Type:PROTEIN  Length:97
 aligned with SKIL_HUMAN | P12757 from UniProtKB/Swiss-Prot  Length:684

    Alignment length:97
                                   150       160       170       180       190       200       210       220       230       
           SKIL_HUMAN   141 STELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPR 237
               SCOP domains d3eq5b_ B: automated matches                                                                      SCOP domains
               CATH domains 3eq5B00 B:141-237 Putative DNA-binding domain                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeeee..eeeeehhhhhh......hhhhhhhhhhhhh...ee.hhhhhhhhhhh..........eeeehhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                 3eq5 B 141 STELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPR 237
                                   150       160       170       180       190       200       210       220       230       

Chain C from PDB  Type:PROTEIN  Length:97
 aligned with SKIL_HUMAN | P12757 from UniProtKB/Swiss-Prot  Length:684

    Alignment length:97
                                   150       160       170       180       190       200       210       220       230       
           SKIL_HUMAN   141 STELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPR 237
               SCOP domains d3eq5c_ C: automated matches                                                                      SCOP domains
               CATH domains 3eq5C00 C:141-237 Putative DNA-binding domain                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeeee..eeeeehhhhhhh.....hhhhhhhhhhhhh...ee.hhhhhhhhhhh..........eeeehhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                 3eq5 C 141 STELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPR 237
                                   150       160       170       180       190       200       210       220       230       

Chain D from PDB  Type:PROTEIN  Length:96
 aligned with SKIL_HUMAN | P12757 from UniProtKB/Swiss-Prot  Length:684

    Alignment length:96
                                   150       160       170       180       190       200       210       220       230      
           SKIL_HUMAN   141 STELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRP 236
               SCOP domains d3eq5d_ D: automated matches                                                                     SCOP domains
               CATH domains 3eq5D00 D:141-236 Putative DNA-binding domain                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee..eeeeeeee..eeeeehhhhhhh.....hhhhhhhhhhhh....ee.hhhhhhhhhhh..........eeeehhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 3eq5 D 141 STELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRP 236
                                   150       160       170       180       190       200       210       220       230      

Chain E from PDB  Type:PROTEIN  Length:95
 aligned with SKIL_HUMAN | P12757 from UniProtKB/Swiss-Prot  Length:684

    Alignment length:95
                                   151       161       171       181       191       201       211       221       231     
           SKIL_HUMAN   142 TELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRP 236
               SCOP domains d3eq5e_ E: automated matches                                                                    SCOP domains
               CATH domains 3eq5E00 E:142-236 Putative DNA-binding domain                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeeeee..eeeeehhhhhhh.....hhhhhhhhhhhh....ee.hhhhhhhhhhh..........eeeehhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 3eq5 E 142 TELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRP 236
                                   151       161       171       181       191       201       211       221       231     

Chain F from PDB  Type:PROTEIN  Length:98
 aligned with SKIL_HUMAN | P12757 from UniProtKB/Swiss-Prot  Length:684

    Alignment length:98
                                   150       160       170       180       190       200       210       220       230        
           SKIL_HUMAN   141 STELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPRT 238
               SCOP domains d3eq5f_ F: automated matches                                                                       SCOP domains
               CATH domains 3eq5F00 F:141-238 Putative DNA-binding domain                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..eeeeeeee..eeeeehhhhhhhh....hhhhhhhhhhhh....ee.hhhhhhhhhhh..........eeeehhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 3eq5 F 141 STELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPRT 238
                                   150       160       170       180       190       200       210       220       230        

Chain G from PDB  Type:PROTEIN  Length:95
 aligned with SKIL_HUMAN | P12757 from UniProtKB/Swiss-Prot  Length:684

    Alignment length:95
                                   150       160       170       180       190       200       210       220       230     
           SKIL_HUMAN   141 STELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLR 235
               SCOP domains d3eq5g_ G: automated matches                                                                    SCOP domains
               CATH domains 3eq5G00 G:141-235 Putative DNA-binding domain                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeeee..eeeeehhhhhh......hhhhhhhhhhhh....ee.hhhhhhhhhhh..........eeeehhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 3eq5 G 141 STELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLR 235
                                   150       160       170       180       190       200       210       220       230     

Chain H from PDB  Type:PROTEIN  Length:96
 aligned with SKIL_HUMAN | P12757 from UniProtKB/Swiss-Prot  Length:684

    Alignment length:96
                                   151       161       171       181       191       201       211       221       231      
           SKIL_HUMAN   142 TELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPR 237
               SCOP domains d3eq5h_ H: automated matches                                                                     SCOP domains
               CATH domains 3eq5H00 H:142-237 Putative DNA-binding domain                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee..eeeeeee....eeeehhhhhhhh....hhhhhhhhhhhh....ee.hhhhhhhhhhh..........eeeehhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 3eq5 H 142 TELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPR 237
                                   151       161       171       181       191       201       211       221       231      

Chain I from PDB  Type:PROTEIN  Length:94
 aligned with SKIL_HUMAN | P12757 from UniProtKB/Swiss-Prot  Length:684

    Alignment length:94
                                   153       163       173       183       193       203       213       223       233    
           SKIL_HUMAN   144 LTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPR 237
               SCOP domains d3eq5i_ I: automated matches                                                                   SCOP domains
               CATH domains 3eq5I00 I:144-237 Putative DNA-binding domain                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeeeee....eeeehhhhhhhh....hhhhhhhhhhhh....ee.hhhhhhhhhhh..........eeeehhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 3eq5 I 144 LTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPR 237
                                   153       163       173       183       193       203       213       223       233    

Chain J from PDB  Type:PROTEIN  Length:96
 aligned with SKIL_HUMAN | P12757 from UniProtKB/Swiss-Prot  Length:684

    Alignment length:96
                                   152       162       172       182       192       202       212       222       232      
           SKIL_HUMAN   143 ELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPRT 238
               SCOP domains d3eq5j_ J: automated matches                                                                     SCOP domains
               CATH domains 3eq5J00 J:143-238 Putative DNA-binding domain                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee..eeeeeeee..eeeeehhhhhhh.....hhhhhhhhhhhh....ee.hhhhhhhhhhh..........eeeehhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 3eq5 J 143 ELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPRT 238
                                   152       162       172       182       192       202       212       222       232      

Chain K from PDB  Type:PROTEIN  Length:96
 aligned with SKIL_HUMAN | P12757 from UniProtKB/Swiss-Prot  Length:684

    Alignment length:96
                                   152       162       172       182       192       202       212       222       232      
           SKIL_HUMAN   143 ELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPRT 238
               SCOP domains d3eq5k_ K: automated matches                                                                     SCOP domains
               CATH domains 3eq5K00 K:143-238 Putative DNA-binding domain                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee....eeeeee....eeeehhhhhh......hhhhhhhhhhhh....ee.hhhhhhhhhhh..........eeeehhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 3eq5 K 143 ELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPRT 238
                                   152       162       172       182       192       202       212       222       232      

Chain L from PDB  Type:PROTEIN  Length:94
 aligned with SKIL_HUMAN | P12757 from UniProtKB/Swiss-Prot  Length:684

    Alignment length:94
                                   153       163       173       183       193       203       213       223       233    
           SKIL_HUMAN   144 LTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPR 237
               SCOP domains d3eq5l_ L: automated matches                                                                   SCOP domains
               CATH domains 3eq5L00 L:144-237 Putative DNA-binding domain                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....eeeeeee..eeeeehhhhhhhh....hhhhhhhhhhhh....ee.hhhhhhhhhhh..........eeeehhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 3eq5 L 144 LTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPR 237
                                   153       163       173       183       193       203       213       223       233    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
1a3eq5B00B:141-237
1b3eq5E00E:142-236
1c3eq5G00G:141-235
1d3eq5I00I:144-237
1e3eq5L00L:144-237
1f3eq5A00A:135-236
1g3eq5C00C:141-237
1h3eq5F00F:141-238
1i3eq5D00D:141-236
1j3eq5H00H:142-237
1k3eq5J00J:143-238
1l3eq5K00K:143-238

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3EQ5)

(-) Gene Ontology  (34, 34)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (SKIL_HUMAN | P12757)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000978    RNA polymerase II core promoter proximal region sequence-specific DNA binding    Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II.
    GO:0046332    SMAD binding    Interacting selectively and non-covalently with a SMAD signaling protein.
    GO:0003682    chromatin binding    Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0032403    protein complex binding    Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019904    protein domain specific binding    Interacting selectively and non-covalently with a specific domain of a protein.
    GO:0003714    transcription corepressor activity    Interacting selectively and non-covalently with a repressing transcription factor and also with the basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between repressive transcription factors and the basal transcription machinery.
    GO:0001078    transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding    Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) in order to stop, prevent, or reduce the frequency, rate or extent of transcription from an RNA polymerase II promoter.
biological process
    GO:0001825    blastocyst formation    The initial formation of a blastocyst from a solid ball of cells known as a morula.
    GO:0007050    cell cycle arrest    A regulatory process that halts progression through the cell cycle during one of the normal phases (G1, S, G2, M).
    GO:0070306    lens fiber cell differentiation    The process in which a relatively unspecialized cell acquires specialized features of a lens fiber cell, any of the elongated, tightly packed cells that make up the bulk of the mature lens in the camera-type eye. The cytoplasm of a lens fiber cell is devoid of most intracellular organelles including the cell nucleus, and contains primarily crystallins, a group of water-soluble proteins expressed in vary large quantities.
    GO:0002260    lymphocyte homeostasis    The process of regulating the proliferation and elimination of lymphocytes such that the total number of lymphocytes within a whole or part of an organism is stable over time in the absence of an outside stimulus.
    GO:0045596    negative regulation of cell differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of cell differentiation.
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0030512    negative regulation of transforming growth factor beta receptor signaling pathway    Any process that stops, prevents, or reduces the frequency, rate or extent of any TGF-beta receptor signaling pathway.
    GO:0050772    positive regulation of axonogenesis    Any process that activates or increases the frequency, rate or extent of axonogenesis.
    GO:1902043    positive regulation of extrinsic apoptotic signaling pathway via death domain receptors    Any process that activates or increases the frequency, rate or extent of extrinsic apoptotic signaling pathway via death domain receptors.
    GO:1902231    positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage    Any process that activates or increases the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to DNA damage.
    GO:0070208    protein heterotrimerization    The formation of a protein heterotrimer, a macromolecular structure consisting of three noncovalently associated subunits, of which not all are identical.
    GO:0070207    protein homotrimerization    The formation of a protein homotrimer, a macromolecular structure consisting of three noncovalently associated identical subunits.
    GO:0042981    regulation of apoptotic process    Any process that modulates the occurrence or rate of cell death by apoptotic process.
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
    GO:0034097    response to cytokine    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus.
    GO:0070848    response to growth factor    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus.
    GO:0007519    skeletal muscle tissue development    The developmental sequence of events leading to the formation of adult skeletal muscle tissue. The main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers.
    GO:0007283    spermatogenesis    The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
    GO:0007179    transforming growth factor beta receptor signaling pathway    A series of molecular signals initiated by the binding of an extracellular ligand to a transforming growth factor beta receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
cellular component
    GO:0016605    PML body    A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection.
    GO:0001669    acrosomal vesicle    A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

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        SKIL_HUMAN | P127575c4v

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