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(-) Description

Title :  NQO5 OF THE TRYPSIN-RESISTANT FRAGMENT (1-134) IN P212121 FORM
 
Authors :  Y. Hanazono, K. Takeda, K. Miki
Date :  09 Mar 16  (Deposition) - 27 Jul 16  (Release) - 27 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Nadh-Ubiquinone Oxidoreductase, Complex I, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Hanazono, K. Takeda, K. Miki
Characterization Of The Nqo5 Subunit Of Bacterial Complex I In The Isolated State
Febs Open Bio V. 6 687 2016
PubMed-ID: 27398308  |  Reference-DOI: 10.1002/2211-5463.12070

(-) Compounds

Molecule 1 - NADH-QUINONE OXIDOREDUCTASE SUBUNIT 5
    Chains: A
    EC Number: 1.6.5.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-134
    Gene: NQO5, TTHA0086
    Organism Scientific: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / DSM 579)
    Organism Taxid: 300852
    Strain: HB8 / ATCC 27634 / DSM 579
    Synonym: NADH DEHYDROGENASE I CHAIN 5,NDH-1 SUBUNIT 5

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:51 , HOH A:323 , HOH A:346 , HOH A:356 , HOH A:360 , HOH A:369binding site for residue CA A 201
2AC2SOFTWAREGLU A:4 , GLU A:8 , GLU A:73 , GLU A:96 , CA A:203 , HOH A:301 , HOH A:364 , HOH A:403binding site for residue CA A 202
3AC3SOFTWAREGLU A:4 , ASP A:51 , GLU A:73 , GLU A:96 , GLU A:97 , CA A:202 , HOH A:383binding site for residue CA A 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5B3P)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Trp A:80 -Lys A:81

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5B3P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5B3P)

(-) Exons   (0, 0)

(no "Exon" information available for 5B3P)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh..eee.....eeee.hhhhhhhhhhhhhhh...eeeeeeeee...........eeeeeeee...........eeeeeeee.....eee.......hhhhhhhhhhhhhh.eee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b3p A   1 MRLERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKAMGFNFLADIVGLDYLTYPDPRPERFAVVYELVSLPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRK 134
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5B3P)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5B3P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5B3P)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  5b3p
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  NQO5_THET8 | Q56219
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NQO5_THET8 | Q56219: 2fug 2ybb 3i9v 3iam 3ias 3m9s 4hea 5b3q

(-) Related Entries Specified in the PDB File

5b3q