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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HYDROPHILIC DOMAIN OF RESPIRATORY COMPLEX I FROM THERMUS THERMOPHILUS, REDUCED, 2 MOL/ASU, WITH BOUND NADH
 
Authors :  L. A. Sazanov, J. M. Berrisford
Date :  14 Jul 09  (Deposition) - 15 Sep 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,1,2,3,4,5,6,7,9
Biol. Unit 1:  1,2,3,4,5,6,7,9  (1x)
Biol. Unit 2:  A,B,C,D,E,F,G,H  (1x)
Keywords :  Oxidoreductase, Electron Transport, Respiratory Chain (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. M. Berrisford, L. A. Sazanov
Structural Basis For The Mechanism Of Respiratory Complex I
J. Biol. Chem. V. 284 29773 2009
PubMed-ID: 19635800  |  Reference-DOI: 10.1074/JBC.M109.032144
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NADH-QUINONE OXIDOREDUCTASE SUBUNIT 1
    Atcc27634 / DSM 579
    Chains1, A
    EC Number1.6.99.5
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
    SynonymNADH DEHYDROGENASE I CHAIN 1, NDH-1 SUBUNIT 1
 
Molecule 2 - NADH-QUINONE OXIDOREDUCTASE SUBUNIT 2
    Atcc27634 / DSM 579
    Chains2, B
    EC Number1.6.99.5
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
    SynonymNADH DEHYDROGENASE I CHAIN 2, NDH-1 SUBUNIT 2
 
Molecule 3 - NADH-QUINONE OXIDOREDUCTASE SUBUNIT 3
    Atcc27634 / DSM 579
    Chains3, C
    EC Number1.6.99.5
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
    SynonymNADH DEHYDROGENASE I CHAIN 3, NDH-1 SUBUNIT 3
 
Molecule 4 - NADH-QUINONE OXIDOREDUCTASE SUBUNIT 4
    Atcc27634 / DSM 579
    Chains4, D
    EC Number1.6.99.5
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
    SynonymNADH DEHYDROGENASE I CHAIN 4, NDH-1 SUBUNIT 4
 
Molecule 5 - NADH-QUINONE OXIDOREDUCTASE SUBUNIT 5
    Atcc27634 / DSM 579
    Chains5, E
    EC Number1.6.99.5
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
    SynonymNADH DEHYDROGENASE I CHAIN 5, NDH-1 SUBUNIT 5
 
Molecule 6 - NADH-QUINONE OXIDOREDUCTASE SUBUNIT 6
    Atcc27634 / DSM 579
    Chains6, F
    EC Number1.6.99.5
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
    SynonymNADH DEHYDROGENASE I SUBUNIT 6, NDH-1 SUBUNIT 6
 
Molecule 7 - NADH-QUINONE OXIDOREDUCTASE SUBUNIT 9
    Atcc27634 / DSM 579
    Chains9, G
    EC Number1.6.99.5
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
    SynonymNADH DEHYDROGENASE I SUBUNIT 9, NDH-1 SUBUNIT 9
 
Molecule 8 - NADH-QUINONE OXIDOREDUCTASE SUBUNIT 15
    Atcc27634 / DSM 579
    Chains7, H
    EC Number1.6.99.5
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
    SynonymNADH DEHYDROGENASE I CHAIN 15, NDH-1 SUBUNIT 15

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit ABCDEFGH12345679
Biological Unit 1 (1x)        12345679
Biological Unit 2 (1x)ABCDEFGH        

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 34)

Asymmetric Unit (6, 34)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2FES4Ligand/IonFE2/S2 (INORGANIC) CLUSTER
3FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
4MG10Ligand/IonMAGNESIUM ION
5NAI2Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
6SF414Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 1 (4, 11)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2FES2Ligand/IonFE2/S2 (INORGANIC) CLUSTER
3FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
4MG-1Ligand/IonMAGNESIUM ION
5NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
6SF47Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 2 (4, 11)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2FES2Ligand/IonFE2/S2 (INORGANIC) CLUSTER
3FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
4MG-1Ligand/IonMAGNESIUM ION
5NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
6SF47Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (34, 34)

Asymmetric Unit (34, 34)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG 4:84 , HIS 4:169 , CYS 6:45 , CYS 6:46 , GLY 6:82 , ARG 6:83 , ALA 6:110 , CYS 6:111 , CYS 6:140 , PRO 6:141BINDING SITE FOR RESIDUE SF4 6 182
02AC2SOFTWAREHIS 9:41 , CYS 9:63 , ILE 9:68 , CYS 9:98 , ILE 9:99 , PHE 9:100 , CYS 9:101 , GLY 9:102 , CYS 9:104BINDING SITE FOR RESIDUE SF4 9 183
03AC3SOFTWARECYS 9:53 , ILE 9:54 , CYS 9:56 , SER 9:57 , CYS 9:59 , CYS 9:108 , THR 9:110 , ALA 9:112BINDING SITE FOR RESIDUE SF4 9 184
04AC4SOFTWAREHIS 3:115 , CYS 3:119 , CYS 3:122 , CYS 3:128 , LEU 3:130 , VAL 3:232 , GLY 3:233BINDING SITE FOR RESIDUE SF4 3 784
05AC5SOFTWARECYS 3:181 , ILE 3:182 , CYS 3:184 , ARG 3:186 , CYS 3:187 , CYS 3:230 , VAL 3:232 , ALA 3:234BINDING SITE FOR RESIDUE SF4 3 785
06AC6SOFTWARECYS 3:256 , CYS 3:259 , VAL 3:261 , GLY 3:262 , CYS 3:263 , ILE 3:290 , CYS 3:291 , PRO 3:407 , ILE 3:408BINDING SITE FOR RESIDUE SF4 3 786
07AC7SOFTWARECYS 3:34 , SER 3:35 , GLY 3:43 , ALA 3:44 , CYS 3:45 , ARG 3:46 , CYS 3:48 , CYS 3:83BINDING SITE FOR RESIDUE FES 3 787
08AC8SOFTWAREPRO 1:199 , SER 1:352 , CYS 1:353 , LYS 1:355 , CYS 1:356 , CYS 1:359 , SER 1:398 , PHE 1:399 , CYS 1:400BINDING SITE FOR RESIDUE SF4 1 439
09AC9SOFTWARECYS 2:83 , SER 2:87 , CYS 2:88 , CYS 2:124 , LEU 2:125 , GLY 2:126 , SER 2:127 , CYS 2:128BINDING SITE FOR RESIDUE FES 2 182
10BC1SOFTWAREGLY 1:64 , ARG 1:65 , GLY 1:66 , LYS 1:75 , ASN 1:92 , ASP 1:94 , SER 1:96 , GLY 1:183 , GLU 1:184 , GLU 1:185 , ILE 1:218 , ASN 1:219 , ASN 1:220 , THR 1:223 , PRO 1:401 , NAI 1:441BINDING SITE FOR RESIDUE FMN 1 440
11BC2SOFTWAREGLY 1:66 , GLY 1:67 , ALA 1:68 , PHE 1:70 , LYS 1:75 , PHE 1:78 , GLU 1:97 , TYR 1:180 , GLU 1:185 , LYS 1:202 , PHE 1:205 , THR 1:325 , PRO 1:401 , FMN 1:440BINDING SITE FOR RESIDUE NAI 1 441
12BC3SOFTWARELEU 3:274 , ASP 3:302BINDING SITE FOR RESIDUE MG 3 788
13BC4SOFTWAREHIS 3:167 , GLU 7:32BINDING SITE FOR RESIDUE MG 3 789
14BC5SOFTWAREHIS 5:144BINDING SITE FOR RESIDUE MG 5 208
15BC6SOFTWAREHIS 1:35 , GLU D:210BINDING SITE FOR RESIDUE MG 1 442
16BC7SOFTWAREASP 3:165 , HIS 3:168 , GLU 7:32 , GLU 7:34 , SER 7:60 , GLY 7:64BINDING SITE FOR RESIDUE CA 7 204
17BC8SOFTWAREVAL 4:223 , ALA 4:384 , LYS 4:386 , GLU 4:388BINDING SITE FOR RESIDUE MG 4 410
18BC9SOFTWAREHIS 1:350 , SER 2:68 , GLU 2:123BINDING SITE FOR RESIDUE MG 2 206
19CC1SOFTWAREARG D:84 , HIS D:169 , CYS F:45 , CYS F:46 , GLY F:82 , ARG F:83 , ALA F:110 , CYS F:111 , CYS F:140 , PRO F:141BINDING SITE FOR RESIDUE SF4 F 182
20CC2SOFTWAREHIS G:41 , CYS G:63 , ILE G:68 , CYS G:98 , ILE G:99 , PHE G:100 , CYS G:101 , GLY G:102 , CYS G:104BINDING SITE FOR RESIDUE SF4 G 183
21CC3SOFTWARECYS G:53 , ILE G:54 , CYS G:56 , SER G:57 , CYS G:59 , CYS G:108 , THR G:110 , ALA G:112BINDING SITE FOR RESIDUE SF4 G 184
22CC4SOFTWAREHIS C:115 , CYS C:119 , CYS C:122 , CYS C:128 , LEU C:130 , VAL C:232 , GLY C:233BINDING SITE FOR RESIDUE SF4 C 784
23CC5SOFTWARECYS C:181 , ILE C:182 , CYS C:184 , CYS C:187 , CYS C:230 , VAL C:232 , ALA C:234 , LEU C:235BINDING SITE FOR RESIDUE SF4 C 785
24CC6SOFTWARECYS C:256 , LEU C:258 , CYS C:259 , VAL C:261 , GLY C:262 , CYS C:263 , CYS C:291BINDING SITE FOR RESIDUE SF4 C 786
25CC7SOFTWARECYS C:34 , SER C:35 , GLY C:43 , ALA C:44 , CYS C:45 , ARG C:46 , CYS C:48 , CYS C:83BINDING SITE FOR RESIDUE FES C 787
26CC8SOFTWAREPRO A:199 , SER A:352 , CYS A:353 , LYS A:355 , CYS A:356 , CYS A:359 , PHE A:399 , CYS A:400 , ALA A:403BINDING SITE FOR RESIDUE SF4 A 439
27CC9SOFTWARECYS B:83 , THR B:85 , SER B:87 , CYS B:88 , CYS B:124 , LEU B:125 , GLY B:126 , SER B:127 , CYS B:128BINDING SITE FOR RESIDUE FES B 182
28DC1SOFTWAREGLY A:64 , GLY A:66 , LYS A:75 , ASN A:92 , ASP A:94 , SER A:96 , GLY A:183 , GLU A:184 , GLU A:185 , ILE A:218 , ASN A:219 , ASN A:220 , THR A:223 , PRO A:401 , NAI A:441BINDING SITE FOR RESIDUE FMN A 440
29DC2SOFTWAREGLY A:66 , GLY A:67 , ALA A:68 , PHE A:70 , LYS A:75 , SER A:96 , GLU A:97 , TYR A:180 , GLU A:185 , LYS A:202 , PHE A:205 , THR A:325 , FMN A:440BINDING SITE FOR RESIDUE NAI A 441
30DC3SOFTWARELEU C:274 , ASP C:302BINDING SITE FOR RESIDUE MG C 788
31DC4SOFTWAREHIS C:167 , GLU H:32BINDING SITE FOR RESIDUE MG C 789
32DC5SOFTWAREHIS E:144BINDING SITE FOR RESIDUE MG E 208
33DC6SOFTWAREGLU 4:210 , HIS A:35BINDING SITE FOR RESIDUE MG A 442
34DC7SOFTWAREASP C:165 , HIS C:168 , GLU H:32 , GLU H:34 , GLY H:64BINDING SITE FOR RESIDUE CA H 204

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
12:144 -2:172
2B:144 -B:172

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ala 2:131 -Pro 2:132
2Cys 6:140 -Pro 6:141
3Ala B:131 -Pro B:132
4Cys F:140 -Pro F:141

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3IAM)

(-) PROSITE Motifs  (13, 30)

Asymmetric Unit (13, 30)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
12FE2S_FER_2PS51085 2Fe-2S ferredoxin-type iron-sulfur binding domain profile.NQO3_THET81-99
 
  23:1-99
C:1-99
2COMPLEX1_75K_1PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1.NQO3_THET831-48
 
  23:31-48
C:31-48
34FE4S_FER_2PS51379 4Fe-4S ferredoxin-type iron-sulfur binding domain profile.NQO9_THET843-73
 
89-118
 
  49:43-73
G:43-73
9:89-118
G:89-118
44FE4S_FER_1PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature.NQO9_THET853-64
 
98-109
 
  49:53-64
G:53-64
9:98-109
G:98-109
5COMPLEX1_49KPS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature.NQO4_THET862-73
 
  24:62-73
D:62-73
6COMPLEX1_24KPS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature.NQO2_THET8114-132
 
  22:114-132
B:114-132
7COMPLEX1_30KPS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature.NQO5_THET8115-136
 
  25:115-136
E:115-136
8COMPLEX1_75K_2PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2.NQO3_THET8119-131
 
  23:119-131
C:119-131
9COMPLEX1_20KPS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature.NQO6_THET8126-142
 
  26:126-142
F:126-142
10COMPLEX1_51K_1PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1.NQO1_THET8176-191
 
  21:176-191
A:176-191
11COMPLEX1_75K_3PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3.NQO3_THET8180-190
 
  23:180-190
C:180-190
124FE4S_MOW_BIS_MGDPS51669 Prokaryotic molybdopterin oxidoreductases 4Fe-4S domain profile.NQO3_THET8249-305
 
  23:249-305
C:249-305
13COMPLEX1_51K_2PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2.NQO1_THET8351-362
 
  21:351-362
A:351-362
Biological Unit 1 (13, 15)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
12FE2S_FER_2PS51085 2Fe-2S ferredoxin-type iron-sulfur binding domain profile.NQO3_THET81-99
 
  13:1-99
-
2COMPLEX1_75K_1PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1.NQO3_THET831-48
 
  13:31-48
-
34FE4S_FER_2PS51379 4Fe-4S ferredoxin-type iron-sulfur binding domain profile.NQO9_THET843-73
 
89-118
 
  29:43-73
-
9:89-118
-
44FE4S_FER_1PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature.NQO9_THET853-64
 
98-109
 
  29:53-64
-
9:98-109
-
5COMPLEX1_49KPS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature.NQO4_THET862-73
 
  14:62-73
-
6COMPLEX1_24KPS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature.NQO2_THET8114-132
 
  12:114-132
-
7COMPLEX1_30KPS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature.NQO5_THET8115-136
 
  15:115-136
-
8COMPLEX1_75K_2PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2.NQO3_THET8119-131
 
  13:119-131
-
9COMPLEX1_20KPS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature.NQO6_THET8126-142
 
  16:126-142
-
10COMPLEX1_51K_1PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1.NQO1_THET8176-191
 
  11:176-191
-
11COMPLEX1_75K_3PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3.NQO3_THET8180-190
 
  13:180-190
-
124FE4S_MOW_BIS_MGDPS51669 Prokaryotic molybdopterin oxidoreductases 4Fe-4S domain profile.NQO3_THET8249-305
 
  13:249-305
-
13COMPLEX1_51K_2PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2.NQO1_THET8351-362
 
  11:351-362
-
Biological Unit 2 (13, 15)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
12FE2S_FER_2PS51085 2Fe-2S ferredoxin-type iron-sulfur binding domain profile.NQO3_THET81-99
 
  1-
C:1-99
2COMPLEX1_75K_1PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1.NQO3_THET831-48
 
  1-
C:31-48
34FE4S_FER_2PS51379 4Fe-4S ferredoxin-type iron-sulfur binding domain profile.NQO9_THET843-73
 
89-118
 
  2-
G:43-73
-
G:89-118
44FE4S_FER_1PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature.NQO9_THET853-64
 
98-109
 
  2-
G:53-64
-
G:98-109
5COMPLEX1_49KPS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature.NQO4_THET862-73
 
  1-
D:62-73
6COMPLEX1_24KPS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature.NQO2_THET8114-132
 
  1-
B:114-132
7COMPLEX1_30KPS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature.NQO5_THET8115-136
 
  1-
E:115-136
8COMPLEX1_75K_2PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2.NQO3_THET8119-131
 
  1-
C:119-131
9COMPLEX1_20KPS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature.NQO6_THET8126-142
 
  1-
F:126-142
10COMPLEX1_51K_1PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1.NQO1_THET8176-191
 
  1-
A:176-191
11COMPLEX1_75K_3PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3.NQO3_THET8180-190
 
  1-
C:180-190
124FE4S_MOW_BIS_MGDPS51669 Prokaryotic molybdopterin oxidoreductases 4Fe-4S domain profile.NQO3_THET8249-305
 
  1-
C:249-305
13COMPLEX1_51K_2PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2.NQO1_THET8351-362
 
  1-
A:351-362

(-) Exons   (0, 0)

(no "Exon" information available for 3IAM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain 1 from PDB  Type:PROTEIN  Length:437
 aligned with NQO1_THET8 | Q56222 from UniProtKB/Swiss-Prot  Length:438

    Alignment length:437
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       
           NQO1_THET8     2 TGPILSGLDPRFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKDDGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMKLYQISGPVKRPGVYELPMGTTFRELIYEWAGGPLEPIQAIIPGGSSTPPLPFTEEVLDTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFKDQYLALAREKRPVPRPSLWR 438
               SCOP domains d3iam11 1:2-249 automated matches                                                                                                                                                                                                                       d3iam12 1:250-333 automated matches                                                 d3iam13 1:334-438 automated matches                                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhh......hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhh.........hhhhhhh..........eeeeee.........hhhhhhhhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhh.....hhhhh....eeeee....hhhhhhhhhhhhhhh................hhhhh.eeeeehhhhhhhhhhhhhhhhhhhh........eeeeeee......eeeeee...hhhhhhh.........eeeee........ee.hhhhhh.......hhhhh......eeeeee...hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COMPLEX1_51K_1  ---------------------------------------------------------------------------------------------------------------------------------------------------------------COMPLEX1_51K---------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iam 1   2 TGPILSGLDPRFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKDDGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMKLYQISGPVKRPGVYELPMGTTFRELIYEWAGGPLEPIQAIIPGGSSTPPLPFTEEVLDTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFKDQYLALAREKRPVPRPSLWR 438
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       

Chain 2 from PDB  Type:PROTEIN  Length:179
 aligned with NQO2_THET8 | Q56221 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:179
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171         
           NQO2_THET8     2 GFFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVPTGKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAGKRLEEIELPGKCGHHVHEVE 180
               SCOP domains d3iam2_ 2: automated matches                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhh............eeeeee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhh.eee......ee..hhhhhhhhhhhhhhh.hhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------COMPLEX1_24K       ------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iam 2   2 GFFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVPTGKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAGKRLEEIELPGKCGHHVHEVE 180
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171         

Chain 3 from PDB  Type:PROTEIN  Length:754
 aligned with NQO3_THET8 | Q56223 from UniProtKB/Swiss-Prot  Length:783

    Alignment length:777
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       
           NQO3_THET8     1 MVRVKVNDRIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPKLAASCVTAVADGMVVDTLSDVVREAQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYGLYEKYYQKGPLELPVYTRFEFTRRHVDKHHPLSPFVILDRERCIHCKRCVRYFEEVPGDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGALLDLTARFRARNWEMEETPTTCALCPVGCGITADTRSGELLRIRAREVPEVNEIWICDAGRFGHEWADQNRLKTPLVRKEGRLVEATWEEAFLALKEGLKEARGEEVGLYLAHDATLEEGLLASELAKALKTPHLDFQGRTAAPASLFPPASLEDLLQADFALVLGDPTEEAPILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIHEVHRPGEEREILLALLGDKEGSEMVAKAKEAWEKAKNPVLILGAGVLQDTVAAERARLLAERKGAKVLAMTPAANARGLEAMGVLPGAKGASWDEPGALYAYYGFVPPEEALKGKRFVVMHLSHLHPLAERYAHVVLPAPTFYEKRGHLVNLEGRVLPLSPAPIENGEAEGALQVLALLAEALGVRPPFRLHLEAQKALKARKVPEAMGRLSFRLKELRPKERKGAFYLRPTMWKAHQAVGKAQEAARAELWAHPETARAEALPEGAQVAVETPFGRVEARVVHREDVPKGHLYLSALGPAAGLRVEGRVLV 777
               SCOP domains d3iam31 3:1-95 automated matches                                                               d3iam32 3:96-246 automated matches                                                                                                                     d3iam33 3:247-685 automated matches                                                                                                                                                                                                                                                                                                                                                                                                                    d3iam34 3:686-777 automated matches                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....eeee....hhhhhhhhhh.....................eeeee..-----------------.......ee..........eee..hhhhhhhhhhhhhhhhh....hhhhh.....hhhhhhhhhhh.....------..................ee....eee........hhhhhhhhhh......ee..hhhhh.ee.........hhhhhhhhh....eee.hhh...hhhhheeeee..........eeeee....eeeeee...........hhhhhhhhhhhhh......eee....eee.hhhhhhhhhhhh........eeeee....hhhhhhhhhhhhhhh....eee......hhhhh.....hhhhhh..eeee.hhhhhhhhhhhhhhhhhh.............................eeee....hhhhhh..eee.....hhhhhhhhhhh....hhhhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhh................eeee....hhhhh....eeeeee.....hhhhhh.eeee..hhhhh.eeee.....eeee...........hhhhhhhhhhhh........hhhhhhhhhhhhh.......................eeeee...hhhhh.........eeeeehhhhhhh.......eeeeee..eeeeeeeee........eeeee.......ee..ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) 2FE2S_FER_2  PDB: 3:1-99 UniProt: 1-99                                                             -----------------------------------------------------------------------------------------------------------------------------------------------------4FE4S_MOW_BIS_MGD  PDB: 3:249-305 UniProt: 249-305       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ------------------------------COMPLEX1_75K_1    -----------------------------------------------------------------------------------------------------------------------------------COMPLEX1_75----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------------------------------------------------------------------------------------------------------------COMPLEX1_75K_---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iam 3   1 MVRVKVNDRIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLP-----------------IQWQPKLAASCVTAVADGMVVDTLSDVVREAQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYGLYEKY------ELPVYTRFEFTRRHVDKHHPLSPFVILDRERCIHCKRCVRYFEEVPGDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGALLDLTARFRARNWEMEETPTTCALCPVGCGITADTRSGELLRIRAREVPEVNEIWICDAGRFGHEWADQNRLKTPLVRKEGRLVEATWEEAFLALKEGLKEARGEEVGLYLAHDATLEEGLLASELAKALKTPHLDFQGRTAAPASLFPPASLEDLLQADFALVLGDPTEEAPILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIHEVHRPGEEREILLALLGDKEGSEMVAKAKEAWEKAKNPVLILGAGVLQDTVAAERARLLAERKGAKVLAMTPAANARGLEAMGVLPGAKGASWDEPGALYAYYGFVPPEEALKGKRFVVMHLSHLHPLAERYAHVVLPAPTFYEKRGHLVNLEGRVLPLSPAPIENGEAEGALQVLALLAEALGVRPPFRLHLEAQKALKARKVPEAMGRLSFRLKELRPKERKGAFYLRPTMWKAHQAVGKAQEAARAELWAHPETARAEALPEGAQVAVETPFGRVEARVVHREDVPKGHLYLSALGPAAGLRVEGRVLV 777
                                    10        20        30        40        50    |    -         -  |     80        90       100       110       120       130       140  |    150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       
                                                                                 55                73                                                                   143    150                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   

Chain 4 from PDB  Type:PROTEIN  Length:378
 aligned with NQO4_THET8 | Q56220 from UniProtKB/Swiss-Prot  Length:409

    Alignment length:385
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404     
           NQO4_THET8    25 VMTLNVGPQHPSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAETIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELKKLLEVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYETYTFDVPLGERGDVFDRMLVRIREMRESVKIIKQALERLEPGPVRDPNPQITPPPRHLLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 409
               SCOP domains d3iam4_        4: automated matches                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.-------...eeeee.......eeeee......hhhhhhhhh...hhhhhhhhh...hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhh.....hhhhhhhhh.....hhhhh...hhhhhh...hhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhh..hhhhhhhhhhhhh.......eeeeeeeee..eeeeeeeee.......eeee.hhhhhh..hhhhhh....hhhhhhhhhh...hhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------COMPLEX1_49K------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iam 4  25 VMTLNVG-------GVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAETIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELKKLLEVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYETYTFDVPLGERGDVFDRMLVRIREMRESVKIIKQALERLEPGPVRDPNPQITPPPRHLLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 409
                                  |  -    |   44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404     
                                 31      39                                                                                                                                                                                                                                                                                                                                                                                  

Chain 5 from PDB  Type:PROTEIN  Length:196
 aligned with NQO5_THET8 | Q56219 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:196
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190      
           NQO5_THET8     1 MRLERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKAMGFNFLADIVGLDYLTYPDPRPERFAVVYELVSLPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPLGETPTLFREGRYIIPAEFRAALTGKDPGLTFYKGGSRKGYRSLW 196
               SCOP domains d3iam5_ 5: automated matches                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eee.....eee..hhhhhhhhhhhhhhhh..eeeeeeeee...........eeeeeeee...........eeeeeeee...............hhhhhhhhhhhhh..................................ee.....eehhhhhh..............hhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------COMPLEX1_30K          ------------------------------------------------------------ PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iam 5   1 MRLERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKAMGFNFLADIVGLDYLTYPDPRPERFAVVYELVSLPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPLGETPTLFREGRYIIPAEFRAALTGKDPGLTFYKGGSRKGYRSLW 196
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190      

Chain 6 from PDB  Type:PROTEIN  Length:144
 aligned with NQO6_THET8 | Q56218 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:161
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174 
           NQO6_THET8    15 EREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFNNYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQAYNERGERLPPVAA 175
               SCOP domains d3iam6_ 6: automated matches                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh.....ee..hhhhhhh.....-----------------....eeee......hhhhhhhhhhh......eeeehhhhhh...........hhhhh....eee.....hhhhhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------------------------------------------------COMPLEX1_20K     --------------------------------- PROSITE (4)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iam 6  15 EREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDA-----------------QADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFNNYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQAYNERGERLPPVAA 175
                                    24        34        44        54 |       -        74        84        94       104       114       124       134       144       154       164       174 
                                                                    56                74                                                                                                     

Chain 7 from PDB  Type:PROTEIN  Length:127
 aligned with NQO15_THET8 | Q5SKZ7 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:127
                                    12        22        32        42        52        62        72        82        92       102       112       122       
          NQO15_THET8     3 ASSERELYEAWVELLSWMREYAQAKGVRFEKEADFPDFIYRMERPYDLPTTIMTASLSDGLGEPFLLADVSPRHAKLKRIGLRLPRAHIHLHAHYEPGKGLVTGKIPLTKERFFALADRAREALAFA 129
               SCOP domains d3iam7_ 7: NADH-quinone oxidoreductase subunit 15, Nqo15                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeehhhhhh...........eeeeeee.....eeeeeee.........eeeee....eeeeeeee...eeee..ee.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iam 7   3 ASSERELYEAWVELLSWMREYAQAKGVRFEKEADFPDFIYRMERPYDLPTTIMTASLSDGLGEPFLLADVSPRHAKLKRIGLRLPRAHIHLHAHYEPGKGLVTGKIPLTKERFFALADRAREALAFA 129
                                    12        22        32        42        52        62        72        82        92       102       112       122       

Chain 9 from PDB  Type:PROTEIN  Length:154
 aligned with NQO9_THET8 | Q56224 from UniProtKB/Swiss-Prot  Length:182

    Alignment length:154
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175    
           NQO9_THET8    26 YPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDFEMADYEYSDLVYGKEDMLVDVVGTKPQRREAKRTGKPVKVGYVVPYVRPELEGFKAPTEG 179
               SCOP domains d3iam9_ 9: automated matches                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.........ee.............hhhhhhh....eeeeeee...........eeeeeeeee.......hhhhhhh....ee..........hhhh.eeehhhhh.....hhhhhhhh..........ee................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------4FE4S_FER_1 ------------------------4FE4S_FER_2  PDB: 9:89-118    ------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -----------------4FE4S_FER_2  PDB: 9:43-73      ------------------------4FE4S_FER_1 ---------------------------------------------------------------------- PROSITE (3)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iam 9  26 YPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDFEMADYEYSDLVYGKEDMLVDVVGTKPQRREAKRTGKPVKVGYVVPYVRPELEGFKAPTEG 179
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175    

Chain A from PDB  Type:PROTEIN  Length:437
 aligned with NQO1_THET8 | Q56222 from UniProtKB/Swiss-Prot  Length:438

    Alignment length:437
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       
           NQO1_THET8     2 TGPILSGLDPRFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKDDGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMKLYQISGPVKRPGVYELPMGTTFRELIYEWAGGPLEPIQAIIPGGSSTPPLPFTEEVLDTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFKDQYLALAREKRPVPRPSLWR 438
               SCOP domains d3iama1 A:2-249 automated matches                                                                                                                                                                                                                       d3iama2 A:250-333 automated matches                                                 d3iama3 A:334-438 automated matches                                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhh......hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhh.........hhhhhhh..........eeeeee.........hhhhhhhhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhh.....hhhhh....eeeee....hhhhhhhhhhhhhhh................hhhhh.eeeeehhhhhhhhhhhhhhhhhhhh........eeeeeee......eeeeee...hhhhhhh.........eeeee........ee.hhhhhh.......hhhhh......eeeeee...hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COMPLEX1_51K_1  ---------------------------------------------------------------------------------------------------------------------------------------------------------------COMPLEX1_51K---------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iam A   2 TGPILSGLDPRFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKDDGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMKLYQISGPVKRPGVYELPMGTTFRELIYEWAGGPLEPIQAIIPGGSSTPPLPFTEEVLDTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFKDQYLALAREKRPVPRPSLWR 438
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       

Chain B from PDB  Type:PROTEIN  Length:179
 aligned with NQO2_THET8 | Q56221 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:179
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171         
           NQO2_THET8     2 GFFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVPTGKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAGKRLEEIELPGKCGHHVHEVE 180
               SCOP domains d3iamb_ B: automated matches                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhh............eeeeee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhh..ee..........hhhhhhhhhhhhhhh.hhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------COMPLEX1_24K       ------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iam B   2 GFFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVPTGKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAGKRLEEIELPGKCGHHVHEVE 180
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171         

Chain C from PDB  Type:PROTEIN  Length:754
 aligned with NQO3_THET8 | Q56223 from UniProtKB/Swiss-Prot  Length:783

    Alignment length:777
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       
           NQO3_THET8     1 MVRVKVNDRIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPKLAASCVTAVADGMVVDTLSDVVREAQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYGLYEKYYQKGPLELPVYTRFEFTRRHVDKHHPLSPFVILDRERCIHCKRCVRYFEEVPGDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGALLDLTARFRARNWEMEETPTTCALCPVGCGITADTRSGELLRIRAREVPEVNEIWICDAGRFGHEWADQNRLKTPLVRKEGRLVEATWEEAFLALKEGLKEARGEEVGLYLAHDATLEEGLLASELAKALKTPHLDFQGRTAAPASLFPPASLEDLLQADFALVLGDPTEEAPILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIHEVHRPGEEREILLALLGDKEGSEMVAKAKEAWEKAKNPVLILGAGVLQDTVAAERARLLAERKGAKVLAMTPAANARGLEAMGVLPGAKGASWDEPGALYAYYGFVPPEEALKGKRFVVMHLSHLHPLAERYAHVVLPAPTFYEKRGHLVNLEGRVLPLSPAPIENGEAEGALQVLALLAEALGVRPPFRLHLEAQKALKARKVPEAMGRLSFRLKELRPKERKGAFYLRPTMWKAHQAVGKAQEAARAELWAHPETARAEALPEGAQVAVETPFGRVEARVVHREDVPKGHLYLSALGPAAGLRVEGRVLV 777
               SCOP domains d3iamc1 C:1-95 automated matches                                                               d3iamc2 C:96-246 automated matches                                                                                                                     d3iamc3 C:247-685 automated matches                                                                                                                                                                                                                                                                                                                                                                                                                    d3iamc4 C:686-777 automated matches                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....eeee....hhhhhhhhhh.....................eeeee..-----------------.......ee..........eee..hhhhhhhhhhhhhhhhh....hhhhh.....hhhhhhhhhhh.....------..................ee....eee........hhhhhhhhhh......ee..hhhhh.ee.........hhhhhhhhh....eee.hhh...hhhhh..eee..........eeeee....eeeeee...........hhhhhhhhhhhhh......eee....eee.hhhhhhhhhhhh........eeeee....hhhhhhhhhhhhhhh....eee......hhhhh.....hhhhhh..eeee.hhhhhhhhhhhhhhhhhh.............................eeee....hhhhhh..eee.....hhhhhhhhhhh....hhhhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhh................eeee....hhhhh....eeeeee.....hhhhhh.eeee..hhhhh.eeee.....eeee...........hhhhhhhhhhhh........hhhhhhhhhhhhh.......................eeeee...hhhhh.........eeeeehhhhhhh.......eeeee.....eeeeeee........eeeee.......ee..ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) 2FE2S_FER_2  PDB: C:1-99 UniProt: 1-99                                                             -----------------------------------------------------------------------------------------------------------------------------------------------------4FE4S_MOW_BIS_MGD  PDB: C:249-305 UniProt: 249-305       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ------------------------------COMPLEX1_75K_1    -----------------------------------------------------------------------------------------------------------------------------------COMPLEX1_75----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------------------------------------------------------------------------------------------------------------COMPLEX1_75K_---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iam C   1 MVRVKVNDRIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLP-----------------IQWQPKLAASCVTAVADGMVVDTLSDVVREAQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYGLYEKY------ELPVYTRFEFTRRHVDKHHPLSPFVILDRERCIHCKRCVRYFEEVPGDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGALLDLTARFRARNWEMEETPTTCALCPVGCGITADTRSGELLRIRAREVPEVNEIWICDAGRFGHEWADQNRLKTPLVRKEGRLVEATWEEAFLALKEGLKEARGEEVGLYLAHDATLEEGLLASELAKALKTPHLDFQGRTAAPASLFPPASLEDLLQADFALVLGDPTEEAPILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIHEVHRPGEEREILLALLGDKEGSEMVAKAKEAWEKAKNPVLILGAGVLQDTVAAERARLLAERKGAKVLAMTPAANARGLEAMGVLPGAKGASWDEPGALYAYYGFVPPEEALKGKRFVVMHLSHLHPLAERYAHVVLPAPTFYEKRGHLVNLEGRVLPLSPAPIENGEAEGALQVLALLAEALGVRPPFRLHLEAQKALKARKVPEAMGRLSFRLKELRPKERKGAFYLRPTMWKAHQAVGKAQEAARAELWAHPETARAEALPEGAQVAVETPFGRVEARVVHREDVPKGHLYLSALGPAAGLRVEGRVLV 777
                                    10        20        30        40        50    |    -         -  |     80        90       100       110       120       130       140  |    150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       
                                                                                 55                73                                                                   143    150                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   

Chain D from PDB  Type:PROTEIN  Length:378
 aligned with NQO4_THET8 | Q56220 from UniProtKB/Swiss-Prot  Length:409

    Alignment length:385
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404     
           NQO4_THET8    25 VMTLNVGPQHPSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAETIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELKKLLEVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYETYTFDVPLGERGDVFDRMLVRIREMRESVKIIKQALERLEPGPVRDPNPQITPPPRHLLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 409
               SCOP domains d3iamd_        D: automated matches                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.-------...eeeee.......eeeee......hhhhhhhhh...hhhhhhhhh...hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhh.....hhhhhhhhh.....hhhhh...hhhhhh...hhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhh..hhhhhhhhhhhhh.......eeeeeeeee..eeeeeeeee.......eeee.hhhhhh..hhhhhh....hhhhhhhhhh...hhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------COMPLEX1_49K------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iam D  25 VMTLNVG-------GVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAETIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELKKLLEVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYETYTFDVPLGERGDVFDRMLVRIREMRESVKIIKQALERLEPGPVRDPNPQITPPPRHLLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 409
                                  |  -    |   44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404     
                                 31      39                                                                                                                                                                                                                                                                                                                                                                                  

Chain E from PDB  Type:PROTEIN  Length:196
 aligned with NQO5_THET8 | Q56219 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:196
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190      
           NQO5_THET8     1 MRLERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKAMGFNFLADIVGLDYLTYPDPRPERFAVVYELVSLPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPLGETPTLFREGRYIIPAEFRAALTGKDPGLTFYKGGSRKGYRSLW 196
               SCOP domains d3iame_ E: automated matches                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh................hhhhhhhhhhhhhhhh..eeeeeeeee...........eeeeeeee...........eeeeeeee...............hhhhhhhhhhhhh..................................ee.hhh.eehhhhhh..............hhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------COMPLEX1_30K          ------------------------------------------------------------ PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iam E   1 MRLERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKAMGFNFLADIVGLDYLTYPDPRPERFAVVYELVSLPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPLGETPTLFREGRYIIPAEFRAALTGKDPGLTFYKGGSRKGYRSLW 196
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190      

Chain F from PDB  Type:PROTEIN  Length:144
 aligned with NQO6_THET8 | Q56218 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:161
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174 
           NQO6_THET8    15 EREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFNNYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQAYNERGERLPPVAA 175
               SCOP domains d3iamf_ F: automated matches                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh.....ee..hhhhhhh.....-----------------....eeee......hhhhhhhhhhh......eeeehhhhhh...........hhhhh....eee.....hhhhhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------------------------------------------------COMPLEX1_20K     --------------------------------- PROSITE (4)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iam F  15 EREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDA-----------------QADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFNNYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQAYNERGERLPPVAA 175
                                    24        34        44        54 |       -        74        84        94       104       114       124       134       144       154       164       174 
                                                                    56                74                                                                                                     

Chain G from PDB  Type:PROTEIN  Length:154
 aligned with NQO9_THET8 | Q56224 from UniProtKB/Swiss-Prot  Length:182

    Alignment length:154
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175    
           NQO9_THET8    26 YPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDFEMADYEYSDLVYGKEDMLVDVVGTKPQRREAKRTGKPVKVGYVVPYVRPELEGFKAPTEG 179
               SCOP domains d3iamg_ G: automated matches                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.........ee..............hhhhhh....eeeeeee...........eeeeeeeee.......hhhhhhh....ee..........hhhh.eeehhhhh.....hhhhhhhh..........ee....hhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------4FE4S_FER_1 ------------------------4FE4S_FER_2  PDB: G:89-118    ------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -----------------4FE4S_FER_2  PDB: G:43-73      ------------------------4FE4S_FER_1 ---------------------------------------------------------------------- PROSITE (3)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iam G  26 YPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDFEMADYEYSDLVYGKEDMLVDVVGTKPQRREAKRTGKPVKVGYVVPYVRPELEGFKAPTEG 179
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175    

Chain H from PDB  Type:PROTEIN  Length:127
 aligned with NQO15_THET8 | Q5SKZ7 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:127
                                    12        22        32        42        52        62        72        82        92       102       112       122       
          NQO15_THET8     3 ASSERELYEAWVELLSWMREYAQAKGVRFEKEADFPDFIYRMERPYDLPTTIMTASLSDGLGEPFLLADVSPRHAKLKRIGLRLPRAHIHLHAHYEPGKGLVTGKIPLTKERFFALADRAREALAFA 129
               SCOP domains d3iamh_ H: NADH-quinone oxidoreductase subunit 15, Nqo15                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeehhhhhh...........eeeeeee.....eeeeeee.........eeeeehhhheeeeeeee...eeee..ee.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iam H   3 ASSERELYEAWVELLSWMREYAQAKGVRFEKEADFPDFIYRMERPYDLPTTIMTASLSDGLGEPFLLADVSPRHAKLKRIGLRLPRAHIHLHAHYEPGKGLVTGKIPLTKERFFALADRAREALAFA 129
                                    12        22        32        42        52        62        72        82        92       102       112       122       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (13, 26)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3IAM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3IAM)

(-) Gene Ontology  (21, 81)

Asymmetric Unit(hide GO term definitions)
Chain 1,A   (NQO1_THET8 | Q56222)
molecular function
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0010181    FMN binding    Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0008137    NADH dehydrogenase (ubiquinone) activity    Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016651    oxidoreductase activity, acting on NAD(P)H    Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
    GO:0048038    quinone binding    Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain 2,B   (NQO2_THET8 | Q56221)
molecular function
    GO:0051537    2 iron, 2 sulfur cluster binding    Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0048038    quinone binding    Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain 3,C   (NQO3_THET8 | Q56223)
molecular function
    GO:0051537    2 iron, 2 sulfur cluster binding    Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0008137    NADH dehydrogenase (ubiquinone) activity    Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0030151    molybdenum ion binding    Interacting selectively and non-covalently with molybdenum (Mo) ions.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016651    oxidoreductase activity, acting on NAD(P)H    Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
    GO:0048038    quinone binding    Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
biological process
    GO:0042773    ATP synthesis coupled electron transport    The transfer of electrons through a series of electron donors and acceptors, generating energy that is ultimately used for synthesis of ATP.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain 4,D   (NQO4_THET8 | Q56220)
molecular function
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0050136    NADH dehydrogenase (quinone) activity    Catalysis of the reaction: NADH + H+ + a quinone = NAD+ + a quinol.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016651    oxidoreductase activity, acting on NAD(P)H    Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
    GO:0048038    quinone binding    Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain 5,E   (NQO5_THET8 | Q56219)
molecular function
    GO:0050136    NADH dehydrogenase (quinone) activity    Catalysis of the reaction: NADH + H+ + a quinone = NAD+ + a quinol.
    GO:0008137    NADH dehydrogenase (ubiquinone) activity    Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016651    oxidoreductase activity, acting on NAD(P)H    Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
    GO:0048038    quinone binding    Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain 6,F   (NQO6_THET8 | Q56218)
molecular function
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0050136    NADH dehydrogenase (quinone) activity    Catalysis of the reaction: NADH + H+ + a quinone = NAD+ + a quinol.
    GO:0008137    NADH dehydrogenase (ubiquinone) activity    Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0048038    quinone binding    Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain 7,H   (NQO15_THET8 | Q5SKZ7)
molecular function
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0048038    quinone binding    Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
biological process
    GO:0016226    iron-sulfur cluster assembly    The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain 9,G   (NQO9_THET8 | Q56224)
molecular function
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0050136    NADH dehydrogenase (quinone) activity    Catalysis of the reaction: NADH + H+ + a quinone = NAD+ + a quinol.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016651    oxidoreductase activity, acting on NAD(P)H    Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
    GO:0048038    quinone binding    Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NQO15_THET8 | Q5SKZ72fug 2ybb 3i9v 3ias 3m9s 4hea
        NQO1_THET8 | Q562222fug 2ybb 3i9v 3ias 3m9s 4hea
        NQO2_THET8 | Q562212fug 2ybb 3i9v 3ias 3m9s 4hea
        NQO3_THET8 | Q562232fug 2ybb 3i9v 3ias 3m9s 4hea
        NQO4_THET8 | Q562202fug 2ybb 3i9v 3ias 3m9s 4hea
        NQO5_THET8 | Q562192fug 2ybb 3i9v 3ias 3m9s 4hea 5b3p 5b3q
        NQO6_THET8 | Q562182fug 2ybb 3i9v 3ias 3m9s 4hea
        NQO9_THET8 | Q562242fug 2ybb 3i9v 3ias 3m9s 4hea

(-) Related Entries Specified in the PDB File

2fug ORIGINAL CRYSTAL STRUCTURE OF THE HYDROPHILIC DOMAIN OF RESPIRATORY COMPLEX I FROM THERMUS THERMOPHILUS, OXIDIZED, 4 MOL/ASU
3i9v CRYSTAL STRUCTURE OF THE HYDROPHILIC DOMAIN OF RESPIRATORY COMPLEX I FROM THERMUS THERMOPHILUS, OXIDIZED, 2 MOL/ASU
3ias CRYSTAL STRUCTURE OF THE HYDROPHILIC DOMAIN OF RESPIRATORY COMPLEX I FROM THERMUS THERMOPHILUS, OXIDIZED, 4 MOL/ASU, RE-REFINED TO 3.15 ANGSTROM RESOLUTION