5AJO - JenaLib

Title :   CRYSTAL STRUCTURE OF THE INACTIVE FORM OF GALNAC-T2 IN COMPLEX WITH THE GLYCOPEPTIDE MUC5AC-3,13

Authors :   E. Lira-Navarrete, M. Delasrivas, I. Companon, M. C. Pallares, Y. Kong J. Iglesias-Fernandez, G. J. L. Bernardes, J. M. Peregrina, C. Rovira P. Bernado, P. Bruscolini, H. Clausen, A. Lostao, F. Corzana, R. Hurtado-Guerrero

Date :   26 Feb 15 (Deposition) - 11 Mar 15 (Release) - 20 May 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.48

Chains :   Asym./Biol. Unit : A,B

Keywords :   Transferase, Afm, Saxs, Lectin Domain, Coarse-Grained Model, Glycopeptides, Inactive Form, Active Form, Compact Form, Extended Form (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Lira-Navarrete, M. De Las Rivas, I. Companon, M. C. Pallares, Y. Kong, J. Iglesias-Fernandez, G. J. L. Bernardes, J. M. Peregrina, C. Rovira, P. Bernado, P. Bruscolini, H. Clausen, A. Lostao, F. Corzana, R. Hurtado-Guerrero
Dynamic Interplay Between Catalytic And Lectin Domains Of Galnac-Transferases Modulates Protein O-Glycosylation.
Nat. Commun. V. 6 6937 2015
PubMed-ID: 25939779 | Reference-DOI: 10.1038/NCOMMS7937

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 33)

Sites (33, 33)

Asymmetric Unit (33, 33)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PRO A:98 , SER A:402 , HOH A:2066 , HOH A:2067 , HOH A:2088 , HOH A:2524 , HOH A:2551 , HOH A:2552 , HOH A:2756 , HOH A:2757	BINDING SITE FOR RESIDUE SO4 A1572
02	AC2	SOFTWARE	ARG A:247 , LYS A:302 , HOH A:2366 , HOH A:2374	BINDING SITE FOR RESIDUE SO4 A1573
03	AC3	SOFTWARE	ASP A:244 , ARG A:245 , HOH A:2370 , HOH A:2372 , HOH A:2759	BINDING SITE FOR RESIDUE SO4 A1574
04	AC4	SOFTWARE	GLY A:88 , GLY A:89 , ASN A:537 , HOH A:2017 , HOH A:2018 , HOH A:2192 , HOH A:2715 , HOH A:2760 , HOH A:2761	BINDING SITE FOR RESIDUE SO4 A1575
05	AC5	SOFTWARE	GLU A:526 , GLY A:527 , HOH A:2697	BINDING SITE FOR RESIDUE SO4 A1576
06	AC6	SOFTWARE	TYR A:284 , LYS A:546 , A2G A:1570 , SO4 A:1596 , HOH A:2436 , HOH A:2652 , HOH A:2653 , HOH A:2764 , SER B:14 , ALA B:15	BINDING SITE FOR RESIDUE SO4 A1577
07	AC7	SOFTWARE	ARG A:438 , HOH A:2602 , HOH A:2667 , HOH A:2669	BINDING SITE FOR RESIDUE SO4 A1578
08	AC8	SOFTWARE	ASN A:277 , THR A:368 , PHE A:369 , GLN A:451 , ASN A:475 , THR A:566 , HOH A:2420 , HOH A:2425 , HOH A:2426 , HOH A:2620 , HOH A:2649	BINDING SITE FOR RESIDUE SO4 A1579
09	AC9	SOFTWARE	PRO A:119 , ASP A:120 , HOH A:2762 , HOH A:2763	BINDING SITE FOR RESIDUE SO4 A1580
10	BC1	SOFTWARE	ARG A:290 , GLY A:409 , ASN A:410 , SO4 A:1596 , SO4 A:1599 , HOH A:2437 , HOH A:2488 , HOH A:2526 , HOH A:2561 , HOH A:2564	BINDING SITE FOR RESIDUE SO4 A1581
11	BC2	SOFTWARE	HIS A:123 , ALA A:268 , ARG A:293 , PRO A:297 , HOH A:2453 , HOH A:2462 , HOH A:2765	BINDING SITE FOR RESIDUE SO4 A1582
12	BC3	SOFTWARE	ARG A:197 , HOH A:2282 , HOH A:2766	BINDING SITE FOR RESIDUE SO4 A1583
13	BC4	SOFTWARE	LYS A:192 , HOH A:2263 , HOH A:2768 , HOH A:2769 , HOH A:2770	BINDING SITE FOR RESIDUE SO4 A1584
14	BC5	SOFTWARE	ARG A:201 , TRP A:331 , HOH A:2188 , HOH A:2191	BINDING SITE FOR RESIDUE SO4 A1585
15	BC6	SOFTWARE	ARG A:77 , ALA A:137 , LYS A:169 , HOH A:2005 , HOH A:2178 , HOH A:2212 , HOH A:2213 , HOH A:2771	BINDING SITE FOR RESIDUE SO4 A1586
16	BC7	SOFTWARE	CYS A:513 , ARG A:514 , GLU A:515	BINDING SITE FOR RESIDUE SO4 A1587
17	BC8	SOFTWARE	SER A:267 , ALA A:268 , ARG A:543 , HOH A:2408 , HOH A:2453 , HOH A:2721 , HOH A:2741 , HOH A:2742 , HOH A:2774	BINDING SITE FOR RESIDUE SO4 A1588
18	BC9	SOFTWARE	ARG A:93 , ARG A:543 , HOH A:2026 , HOH A:2027 , HOH A:2725 , HOH A:2775	BINDING SITE FOR RESIDUE SO4 A1589
19	CC1	SOFTWARE	ARG A:532	BINDING SITE FOR RESIDUE SO4 A1590
20	CC2	SOFTWARE	LYS A:161 , HOH A:2096 , HOH A:2119 , HOH A:2121 , HOH A:2204 , HOH A:2207 , HOH A:2776	BINDING SITE FOR RESIDUE SO4 A1591
21	CC3	SOFTWARE	ARG A:382 , ARG A:404 , HOH A:2554 , HOH A:2559	BINDING SITE FOR RESIDUE SO4 A1592
22	CC4	SOFTWARE	ARG A:197 , ASN A:198 , ASP A:199 , ARG A:210 , HOH A:2277 , HOH A:2280	BINDING SITE FOR RESIDUE SO4 A1593
23	CC5	SOFTWARE	MET A:91 , VAL A:500 , ASP A:501 , ARG A:502 , HOH A:2081 , HOH A:2677	BINDING SITE FOR RESIDUE SO4 A1594
24	CC6	SOFTWARE	ASN A:528 , LYS A:564 , HOH A:2546 , HOH A:2747	BINDING SITE FOR RESIDUE SO4 A1595
25	CC7	SOFTWARE	ARG A:290 , SO4 A:1577 , SO4 A:1581 , HOH A:2764	BINDING SITE FOR RESIDUE SO4 A1596
26	CC8	SOFTWARE	PHE A:463 , ALA A:464 , ASP A:494 , LEU A:495 , HOH A:2672	BINDING SITE FOR RESIDUE SO4 A1597
27	CC9	SOFTWARE	MET A:326 , SER A:413 , ARG A:414 , HOH A:2484 , HOH A:2486	BINDING SITE FOR RESIDUE SO4 A1598
28	DC1	SOFTWARE	PRO A:407 , TYR A:408 , GLY A:409 , SO4 A:1581 , HOH A:2558 , HOH A:2730	BINDING SITE FOR RESIDUE SO4 A1599
29	DC2	SOFTWARE	ARG A:240 , PRO A:300 , HOH A:2149 , HOH A:2363 , HOH A:2461 , HOH A:2463 , HOH A:2778	BINDING SITE FOR RESIDUE SO4 A1600
30	DC3	SOFTWARE	ASP A:516 , SER A:518	BINDING SITE FOR RESIDUE SO4 A1601
31	DC4	SOFTWARE	VAL A:330 , TRP A:331 , HOH A:2287 , HOH A:2289 , HOH A:2454 , HOH A:2492	BINDING SITE FOR RESIDUE SO4 A1602
32	DC5	SOFTWARE	PHE A:280 , ALA A:307 , GLY A:332 , GLY A:333 , GLU A:334 , ASN A:335 , TYR A:367 , PHE A:377 , HOH A:2427 , HOH A:2428 , THR B:3 , PRO B:4 , SER B:5	BINDING SITE FOR MONO-SACCHARIDE A2G A1571 BOUND TO THR B 3
33	DC6	SOFTWARE	ASP A:458 , LEU A:460 , HIS A:474 , GLY A:478 , ASN A:479 , SO4 A:1577 , HOH A:2642 , HOH A:2753 , HOH A:2754 , SER B:11 , THR B:13 , SER B:14 , ALA B:15	BINDING SITE FOR MONO-SACCHARIDE A2G A1570 BOUND TO THR B 13

SS Bonds (5, 5)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:495
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh.............hhhhhhhh..........hhhhhhh........eeeeeee...hhhhhhhhhhhhhhhhhhh.eeeeeeee.....hhhhhhhhh...eeeee.....hhhhhhhhhhhhh...eeeee...eee....hhhhhhhhhhh..eeeeeeeeee......ee.....eeeee.....eeeee.hhhhhhhhhhh....ee........eeeehhhhhhh.............hhhhhhhhhhh..eeeeeeeeeeeee...........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhh...hhhhhhhhh............eeeeeee..eeee..........eeee....hhhhheee.....eee..eeee..........eeee....hhhh.eeee....eeee....eeee..hhhhh..eeee...hhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ajo A  75 KVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFGALQQGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDRAPGSLIKLQGCREDDSRQKWEQIEGNSKLRHVGSNLCLDSRTAKSGGLSVEVCGPALSQQWKFTLNL 569
                                    84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564

Chain B from PDB  Type:PROTEIN  Length:17
                                                 
               SCOP domains ----------------- SCOP domains
               CATH domains ----------------- CATH domains
               Pfam domains ----------------- Pfam domains
         Sec.struct. author ................. Sec.struct. author
                 SAPs(SNPs) ----------------- SAPs(SNPs)
                    PROSITE ----------------- PROSITE
                 Transcript ----------------- Transcript
                 5ajo B   0 AGTTPSPVPTTSTTSAA  16
                                     9

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (31, 34)

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