4D0T - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   GALNAC-T2 CRYSTAL SOAKED WITH UDP-GALNAC, EA2 PEPTIDE AND MANGANESE

Authors :   E. Lira-Navarrete, J. Iglesias-Fernandez, W. F. Zandberg, I. Compano F. Corzana, B. M. Pinto, H. Clausen, J. M. Peregrina, D. Vocadlo, C. Rov R. Hurtado-Guerrero

Date :   30 Apr 14 (Deposition) - 28 May 14 (Release) - 13 Aug 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.45

Chains :   Asym. Unit : A,B,C,D,E,F,P,Z
Biol. Unit 1: C,F,P  (1x)
Biol. Unit 2: B,E,Z  (1x)
Biol. Unit 3: A,D  (1x)

Keywords :   Transferase, Retaining Galnac-T2, Substrate-Guided Sni-Type Reaction, Qm/Mm Metadynamics, Bi-Bi Kinetic Mechanism, Substrate Specificity, Protein X-Ray Crystallography, Acetamido Group (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Lira-Navarrete, J. Iglesias-Fernandez, W. F. Zandberg, I. Companon, Y. Kong, F. Corzana, B. M. Pinto, H. Clausen, J. M. Peregrina, D. Vocadlo, C. Rovira, R. Hurtado-Guerrero
Substrate-Guided Front-Face Reaction Revealed By Combined Structural Snapshots And Metadynamics For The Polypeptide N Acetylgalactosaminyltransferase 2.
Angew. Chem. Int. Ed. Engl. V. 53 8206 2014
PubMed-ID: 24954443 | Reference-DOI: 10.1002/ANIE.201402781

Molecule 1 - PEPTIDE
	Chains	:	P, Z
	Organism Scientific	:	SYNTHETIC CONSTRUCT
	Organism Taxid	:	32630

Molecule 2 - POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 2
	Chains	:	A, C, B, E, D, F
	EC Number	:	2.4.1.41
	Engineered	:	YES
	Expression System	:	KOMAGATAELLA PASTORIS
	Expression System Strain	:	SMD-1168
	Expression System Taxid	:	4922
	Expression System Vector	:	PPICZALPHAA
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	POLYPEPTIDE GALNAC TRANSFERASE 2, GALNAC-T2, PP-GANTASE 2, PROTEIN-UDP ACETYLGALACTOSAMINYLTRANSFERASE 2, UDP-GALNAC, POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 2, POLYPEPTIDE GALNAC-TRANSFERASE T2

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	P	Z
Biological Unit 1 (1x)	:			C			F	P
Biological Unit 2 (1x)	:		B			E			Z
Biological Unit 3 (1x)	:	A			D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 23)

No.	Name	Count	Type	Full Name
1	EDO	10	Ligand/Ion	1,2-ETHANEDIOL
2	MN	6	Ligand/Ion	MANGANESE (II) ION
3	NGA	1	Ligand/Ion	N-ACETYL-D-GALACTOSAMINE
4	UD2	5	Ligand/Ion	URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE
5	UDP	1	Ligand/Ion	URIDINE-5'-DIPHOSPHATE

Biological Unit 1 (4, 5)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	MN	-1	Ligand/Ion	MANGANESE (II) ION
3	NGA	1	Ligand/Ion	N-ACETYL-D-GALACTOSAMINE
4	UD2	1	Ligand/Ion	URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE
5	UDP	1	Ligand/Ion	URIDINE-5'-DIPHOSPHATE

Biological Unit 2 (2, 6)

No.	Name	Count	Type	Full Name
1	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
2	MN	-1	Ligand/Ion	MANGANESE (II) ION
3	NGA	-1	Ligand/Ion	N-ACETYL-D-GALACTOSAMINE
4	UD2	2	Ligand/Ion	URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE
5	UDP	-1	Ligand/Ion	URIDINE-5'-DIPHOSPHATE

Biological Unit 3 (2, 6)

No.	Name	Count	Type	Full Name
1	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
2	MN	-1	Ligand/Ion	MANGANESE (II) ION
3	NGA	-1	Ligand/Ion	N-ACETYL-D-GALACTOSAMINE
4	UD2	2	Ligand/Ion	URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE
5	UDP	-1	Ligand/Ion	URIDINE-5'-DIPHOSPHATE

Asymmetric Unit (23, 23)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:224 , HIS A:226 , HIS A:359 , UD2 A:1574 , HOH A:2049	BINDING SITE FOR RESIDUE MN A1571
02	AC2	SOFTWARE	ASP B:224 , HIS B:226 , HIS B:359 , UD2 B:1573	BINDING SITE FOR RESIDUE MN B1570
03	AC3	SOFTWARE	ASP C:224 , HIS C:226 , HIS C:359 , UDP C:1571 , HOH C:2027	BINDING SITE FOR RESIDUE MN C1570
04	AC4	SOFTWARE	THR C:143 , PHE C:144 , HIS C:145 , ASP C:176 , ARG C:201 , GLY C:203 , LEU C:204 , ASP C:224 , SER C:225 , HIS C:226 , VAL C:330 , TRP C:331 , HIS C:359 , ARG C:362 , TYR C:367 , MN C:1570 , HOH C:2014 , HOH C:2027 , HOH C:2046 , HOH C:2047 , THR P:7 , NGA P:1572	BINDING SITE FOR RESIDUE UDP C1571
05	AC5	SOFTWARE	ASP D:224 , HIS D:226 , HIS D:359 , UD2 D:1571	BINDING SITE FOR RESIDUE MN D1570
06	AC6	SOFTWARE	ASP E:224 , HIS E:226 , HIS E:359 , UD2 E:1571 , HOH E:2053	BINDING SITE FOR RESIDUE MN E1570
07	AC7	SOFTWARE	ASP F:224 , HIS F:226 , HIS F:359 , UD2 F:1567	BINDING SITE FOR RESIDUE MN F1566
08	AC8	SOFTWARE	THR D:143 , PHE D:144 , HIS D:145 , ASP D:176 , ARG D:201 , GLY D:203 , LEU D:204 , ARG D:208 , ASP D:224 , SER D:225 , HIS D:226 , ALA D:307 , GLY D:308 , GLY D:309 , LEU D:310 , VAL D:330 , TRP D:331 , GLY D:332 , GLU D:334 , HIS D:359 , ARG D:362 , TYR D:367 , MN D:1570 , HOH D:2017	BINDING SITE FOR RESIDUE UD2 D1571
09	AC9	SOFTWARE	THR E:143 , PHE E:144 , HIS E:145 , ASP E:176 , ARG E:201 , GLY E:203 , ARG E:208 , ASP E:224 , SER E:225 , HIS E:226 , ALA E:307 , GLY E:308 , GLY E:309 , VAL E:330 , TRP E:331 , GLY E:332 , GLU E:334 , HIS E:359 , ARG E:362 , TYR E:367 , MN E:1570 , HOH E:2022 , HOH E:2053	BINDING SITE FOR RESIDUE UD2 E1571
10	BC1	SOFTWARE	THR F:143 , PHE F:144 , HIS F:145 , ASP F:176 , ARG F:201 , GLY F:203 , ARG F:208 , ASP F:224 , SER F:225 , HIS F:226 , ALA F:307 , GLY F:308 , GLY F:309 , VAL F:330 , TRP F:331 , GLY F:332 , GLU F:334 , HIS F:359 , ARG F:362 , TYR F:367 , MN F:1566	BINDING SITE FOR RESIDUE UD2 F1567
11	BC2	SOFTWARE	PHE E:81 , ASN E:82 , LYS E:189	BINDING SITE FOR RESIDUE EDO E1572
12	BC3	SOFTWARE	TRP C:78 , PRO C:79 , MET C:114 , ASP C:115 , ARG E:132 , ASP E:134 , PRO E:136 , ALA E:242	BINDING SITE FOR RESIDUE EDO E1573
13	BC4	SOFTWARE	GLU B:231 , HIS B:232	BINDING SITE FOR RESIDUE EDO B1571
14	BC5	SOFTWARE	ASP D:115 , ARG D:116 , ALA D:117 , ILE D:118 , LYS D:161 , LYS D:162 , HOH D:2012	BINDING SITE FOR RESIDUE EDO D1572
15	BC6	SOFTWARE	PRO D:165 , HIS D:166 , LYS D:192	BINDING SITE FOR RESIDUE EDO D1573
16	BC7	SOFTWARE	VAL C:279 , PHE C:280 , ASN C:335 , PHE C:377 , THR P:7 , NGA P:1572	BINDING SITE FOR RESIDUE EDO C1573
17	BC8	SOFTWARE	ARG B:543 , ALA B:558 , LEU B:559 , SER B:560 , HOH B:2095	BINDING SITE FOR RESIDUE EDO B1572
18	BC9	SOFTWARE	ALA A:137 , HIS A:166 , ILE A:168 , LYS A:192	BINDING SITE FOR RESIDUE EDO A1572
19	CC1	SOFTWARE	TYR A:177 , ARG A:200 , ARG A:201	BINDING SITE FOR RESIDUE EDO A1573
20	CC2	SOFTWARE	HIS C:166 , ILE C:168 , LYS C:169 , LYS C:192	BINDING SITE FOR RESIDUE EDO C1574
21	CC3	SOFTWARE	THR A:143 , PHE A:144 , HIS A:145 , ASP A:176 , ARG A:201 , GLY A:203 , LEU A:204 , ARG A:208 , ASP A:224 , SER A:225 , HIS A:226 , ALA A:307 , GLY A:308 , GLY A:309 , VAL A:330 , TRP A:331 , GLY A:332 , GLU A:334 , HIS A:359 , ARG A:362 , TYR A:367 , MN A:1571 , HOH A:2028 , HOH A:2049	BINDING SITE FOR RESIDUE UD2 A1574
22	CC4	SOFTWARE	THR B:143 , PHE B:144 , HIS B:145 , ASP B:176 , ARG B:201 , GLY B:203 , LEU B:204 , ARG B:208 , ASP B:224 , SER B:225 , HIS B:226 , ALA B:307 , GLY B:308 , GLY B:309 , VAL B:330 , TRP B:331 , GLY B:332 , GLU B:334 , HIS B:359 , ARG B:362 , TYR B:367 , MN B:1570 , THR Z:6 , THR Z:7	BINDING SITE FOR RESIDUE UD2 B1573
23	CC5	SOFTWARE	ARG C:208 , ASP C:224 , ALA C:307 , GLY C:308 , GLY C:309 , TRP C:331 , GLY C:332 , GLU C:334 , HIS C:359 , UDP C:1571 , EDO C:1573 , THR P:7	BINDING SITE FOR MONO-SACCHARIDE NGA P1572 BOUND TO THR P 7

Asymmetric Unit

No.	Residues
1	A:126	-	A:354
2	A:345	-	A:423
3	A:456	-	A:473
4	A:496	-	A:513
5	A:539	-	A:555
6	B:126	-	B:354
7	B:345	-	B:423
8	B:456	-	B:473
9	B:496	-	B:513
10	B:539	-	B:555
11	C:126	-	C:354
12	C:345	-	C:423
13	C:456	-	C:473
14	C:496	-	C:513
15	C:539	-	C:555
16	D:126	-	D:354
17	D:345	-	D:423
18	D:456	-	D:473
19	D:496	-	D:513
20	D:539	-	D:555
21	E:126	-	E:354
22	E:345	-	E:423
23	E:456	-	E:473
24	E:496	-	E:513
25	E:539	-	E:555
26	F:126	-	F:354
27	F:345	-	F:423
28	F:456	-	F:473
29	F:496	-	F:513
30	F:539	-	F:555

Asymmetric Unit

No.	Residues
1	Gly F:332	-	Gly F:333
2	Gly F:372	-	Ser F:373
3	His F:442	-	Gln F:443

Asymmetric Unit (2, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_049240	R	245	H	GALT2_HUMAN	Polymorphism	1923950	A/B/C/D/E/F	R	245	H
2	UniProt	VAR_019575	V	554	M	GALT2_HUMAN	Polymorphism	2273970	A/B/C/D/E/F	V	554	M

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (2, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_049240	R	245	H	GALT2_HUMAN	Polymorphism	1923950	C/F	R	245	H
2	UniProt	VAR_019575	V	554	M	GALT2_HUMAN	Polymorphism	2273970	C/F	V	554	M

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (2, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_049240	R	245	H	GALT2_HUMAN	Polymorphism	1923950	B/E	R	245	H
2	UniProt	VAR_019575	V	554	M	GALT2_HUMAN	Polymorphism	2273970	B/E	V	554	M

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (2, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_049240	R	245	H	GALT2_HUMAN	Polymorphism	1923950	A/D	R	245	H
2	UniProt	VAR_019575	V	554	M	GALT2_HUMAN	Polymorphism	2273970	A/D	V	554	M

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RICIN_B_LECTIN	PS50231	Lectin domain of ricin B chain profile.	GALT2_HUMAN	456-566	6	A:456-566 B:456-566 C:456-566 D:456-566 E:456-566 F:456-565

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RICIN_B_LECTIN	PS50231	Lectin domain of ricin B chain profile.	GALT2_HUMAN	456-566	2	- - C:456-566 - - F:456-565

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RICIN_B_LECTIN	PS50231	Lectin domain of ricin B chain profile.	GALT2_HUMAN	456-566	2	- B:456-566 - - E:456-566 -

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RICIN_B_LECTIN	PS50231	Lectin domain of ricin B chain profile.	GALT2_HUMAN	456-566	2	A:456-566 - - D:456-566 - -

Asymmetric Unit (14, 84)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.2a	ENST00000366672	2a	ENSE00001442291	chr1:230202956-230203153	198	GALT2_HUMAN	1-42	42	0	-	-
1.4	ENST00000366672	4	ENSE00001007552	chr1:230313964-230314057	94	GALT2_HUMAN	43-74	32	0	-	-
1.5	ENST00000366672	5	ENSE00001007567	chr1:230338883-230339036	154	GALT2_HUMAN	74-125	52	6	A:75-125 B:75-125 C:75-125 D:75-125 E:75-125 F:75-125	51 51 51 51 51 51
1.6	ENST00000366672	6	ENSE00001007559	chr1:230371760-230371858	99	GALT2_HUMAN	125-158	34	6	A:125-158 B:125-158 C:125-158 D:125-158 E:125-158 F:125-158	34 34 34 34 34 34
1.7	ENST00000366672	7	ENSE00001007566	chr1:230372099-230372166	68	GALT2_HUMAN	158-181	24	6	A:158-181 B:158-181 C:158-181 D:158-181 E:158-181 F:158-181	24 24 24 24 24 24
1.8	ENST00000366672	8	ENSE00001007558	chr1:230372406-230372471	66	GALT2_HUMAN	181-203	23	6	A:181-203 B:181-203 C:181-203 D:181-203 E:181-203 F:181-203	23 23 23 23 23 23
1.9	ENST00000366672	9	ENSE00001007570	chr1:230379052-230379173	122	GALT2_HUMAN	203-243	41	6	A:203-243 B:203-243 C:203-243 D:203-243 E:203-243 F:203-243	41 41 41 41 41 41
1.10	ENST00000366672	10	ENSE00001007561	chr1:230381809-230381896	88	GALT2_HUMAN	244-273	30	6	A:244-273 B:244-273 C:244-273 D:244-273 E:244-273 F:244-273	30 30 30 30 30 30
1.11	ENST00000366672	11	ENSE00001007560	chr1:230384930-230385017	88	GALT2_HUMAN	273-302	30	6	A:273-302 B:273-302 C:273-302 D:273-302 E:273-302 F:273-302	30 30 30 30 30 30
1.12	ENST00000366672	12	ENSE00001007564	chr1:230386203-230386306	104	GALT2_HUMAN	302-337	36	6	A:302-337 B:302-337 C:302-337 D:302-337 E:302-337 F:302-337	36 36 36 36 36 36
1.13	ENST00000366672	13	ENSE00001007554	chr1:230390964-230391090	127	GALT2_HUMAN	337-379	43	6	A:337-379 B:337-379 C:337-379 D:337-379 E:337-379 F:337-379	43 43 43 43 43 43
1.15c	ENST00000366672	15c	ENSE00001007562	chr1:230398319-230398411	93	GALT2_HUMAN	379-410	32	6	A:379-410 B:379-410 C:379-410 D:379-410 E:379-410 F:379-410	32 32 32 32 32 32
1.16a	ENST00000366672	16a	ENSE00001007556	chr1:230398668-230398751	84	GALT2_HUMAN	410-438	29	6	A:410-438 B:410-438 C:410-438 D:410-438 E:410-438 F:410-438	29 29 29 29 29 29
1.17	ENST00000366672	17	ENSE00001007563	chr1:230400987-230401113	127	GALT2_HUMAN	438-480	43	6	A:438-480 B:438-480 C:438-480 D:438-480 E:438-480 F:438-480	43 43 43 43 43 43
1.18	ENST00000366672	18	ENSE00001007568	chr1:230410191-230410310	120	GALT2_HUMAN	481-520	40	6	A:481-520 B:481-520 C:481-520 D:481-520 E:481-520 F:481-520	40 40 40 40 40 40
1.19b	ENST00000366672	19b	ENSE00001935591	chr1:230415049-230417870	2822	GALT2_HUMAN	521-571	51	6	A:521-570 B:521-569 C:521-569 D:521-569 E:521-569 F:521-565 (gaps)	50 49 49 49 49 45

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:496
 aligned with GALT2_HUMAN | Q10471 from UniProtKB/Swiss-Prot  Length:571

    Alignment length:496
                                    84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564      
          GALT2_HUMAN    75 KVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFGALQQGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDRAPGSLIKLQGCRENDSRQKWEQIEGNSKLRHVGSNLCLDSRTAKSGGLSVEVCGPALSQQWKFTLNLQ 570
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh................hhhhhhhh..........hhhhhhh........eeeeeee...hhhhhhhhhhhhhhhhhhh.eeeeeeee.....hhhhhhhhh...eeeee....hhhhhhhhhhhhhh...eeee....eee....hhhhhhhhhhh..eeeeeeeeee......ee.....eeeee.....eeeee.hhhhhhhh.......ee........eeeehhhhhhh...........hhhhhhhhhhhhh..eeeeeeeeeeeee.............hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhh............eeeeeee..eeee..........eeee....hhhhheee.....eee..eeee..........eeee....hhhh.eeee....eeee....eeee..hhhhh..eeee...hhhhh.eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M---------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RICIN_B_LECTIN  PDB: A:456-566 UniProt: 456-566                                                                ---- PROSITE
           Transcript 1 (1) Exon 1.5  PDB: A:75-125 UniProt: 74-125            --------------------------------Exon 1.7  PDB: A:158-181---------------------Exon 1.9  PDB: A:203-243 UniProt: 203-243Exon 1.10  PDB: A:244-273     ----------------------------Exon 1.12  PDB: A:302-337           -----------------------------------------Exon 1.15c  PDB: A:379-410      ---------------------------Exon 1.17  PDB: A:438-480 UniProt: 438-480 Exon 1.18  PDB: A:481-520               Exon 1.19b  PDB: A:521-570 UniProt: 521-571        Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------Exon 1.6  PDB: A:125-158          ----------------------Exon 1.8  PDB: A:181-20---------------------------------------------------------------------Exon 1.11  PDB: A:273-302     ----------------------------------Exon 1.13  PDB: A:337-379 UniProt: 337-379 ------------------------------Exon 1.16a  PDB: A:410-438   ------------------------------------------------------------------------------------------------------------------------------------ Transcript 1 (2)
                 4d0t A  75 KVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFGALQQGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDRAPGSLIKLQGCREDDSRQKWEQIEGNSKLRHVGSNLCLDSRTAKSGGLSVEVCGPALSQQWKFTLNLQ 570
                                    84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564

Chain B from PDB  Type:PROTEIN  Length:495
 aligned with GALT2_HUMAN | Q10471 from UniProtKB/Swiss-Prot  Length:571

    Alignment length:495
                                    84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564     
          GALT2_HUMAN    75 KVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFGALQQGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDRAPGSLIKLQGCRENDSRQKWEQIEGNSKLRHVGSNLCLDSRTAKSGGLSVEVCGPALSQQWKFTLNL 569
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...............hhhhhhhh..........hhhhhhh........eeeeeee...hhhhhhhhhhhhhhhhhhh.eeeeeeee.....hhhhhhhhh...eeeee.....hhhhhhhhhhhhh...eeee....eee....hhhhhhhhhhh..eeeeeeeeee......ee.....eeeee.....eeeee.hhhhhhhh.......ee........eeeehhhhhhh...........hhhhhhhhhhhhh..eeeeeeeeeeeee...........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhh............eeeeeee..eeee..........eeee.........eee.....eee..eeee..........eeee....hhhh.eeee....eeee....eeee..hhhhh..eeee...hhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M--------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RICIN_B_LECTIN  PDB: B:456-566 UniProt: 456-566                                                                --- PROSITE
           Transcript 1 (1) Exon 1.5  PDB: B:75-125 UniProt: 74-125            --------------------------------Exon 1.7  PDB: B:158-181---------------------Exon 1.9  PDB: B:203-243 UniProt: 203-243Exon 1.10  PDB: B:244-273     ----------------------------Exon 1.12  PDB: B:302-337           -----------------------------------------Exon 1.15c  PDB: B:379-410      ---------------------------Exon 1.17  PDB: B:438-480 UniProt: 438-480 Exon 1.18  PDB: B:481-520               Exon 1.19b  PDB: B:521-569 UniProt: 521-571       Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------Exon 1.6  PDB: B:125-158          ----------------------Exon 1.8  PDB: B:181-20---------------------------------------------------------------------Exon 1.11  PDB: B:273-302     ----------------------------------Exon 1.13  PDB: B:337-379 UniProt: 337-379 ------------------------------Exon 1.16a  PDB: B:410-438   ----------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 4d0t B  75 KVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFGALQQGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDRAPGSLIKLQGCREDDSRQKWEQIEGNSKLRHVGSNLCLDSRTAKSGGLSVEVCGPALSQQWKFTLNL 569
                                    84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564

Chain C from PDB  Type:PROTEIN  Length:495
 aligned with GALT2_HUMAN | Q10471 from UniProtKB/Swiss-Prot  Length:571

    Alignment length:495
                                    84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564     
          GALT2_HUMAN    75 KVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFGALQQGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDRAPGSLIKLQGCRENDSRQKWEQIEGNSKLRHVGSNLCLDSRTAKSGGLSVEVCGPALSQQWKFTLNL 569
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh................hhhhhhh..........................eeeeeee...hhhhhhhhhhhhhhhhhhh.eeeeeeee.....hhhhhhhhh...eeeee....hhhhhhhhhhhhhh...eeee....eee....hhhhhhhhhhh..eeeeeeeeee......ee.....eeeee.....eeeee.hhhhhhhh.......ee........eeeehhhhhhh...........hhhhhhhhhhhhh..eeeeeeeeeeeee...........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhh............eeeeeee..eeee..........eeee....hhhhheee.....eee..eeee..........eeee....hhhh.eeee....eeee....eeee..hhhhh..eeee...hhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M--------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RICIN_B_LECTIN  PDB: C:456-566 UniProt: 456-566                                                                --- PROSITE
           Transcript 1 (1) Exon 1.5  PDB: C:75-125 UniProt: 74-125            --------------------------------Exon 1.7  PDB: C:158-181---------------------Exon 1.9  PDB: C:203-243 UniProt: 203-243Exon 1.10  PDB: C:244-273     ----------------------------Exon 1.12  PDB: C:302-337           -----------------------------------------Exon 1.15c  PDB: C:379-410      ---------------------------Exon 1.17  PDB: C:438-480 UniProt: 438-480 Exon 1.18  PDB: C:481-520               Exon 1.19b  PDB: C:521-569 UniProt: 521-571       Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------Exon 1.6  PDB: C:125-158          ----------------------Exon 1.8  PDB: C:181-20---------------------------------------------------------------------Exon 1.11  PDB: C:273-302     ----------------------------------Exon 1.13  PDB: C:337-379 UniProt: 337-379 ------------------------------Exon 1.16a  PDB: C:410-438   ----------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 4d0t C  75 KVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFGALQQGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDRAPGSLIKLQGCREDDSRQKWEQIEGNSKLRHVGSNLCLDSRTAKSGGLSVEVCGPALSQQWKFTLNL 569
                                    84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564

Chain D from PDB  Type:PROTEIN  Length:495
 aligned with GALT2_HUMAN | Q10471 from UniProtKB/Swiss-Prot  Length:571

    Alignment length:495
                                    84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564     
          GALT2_HUMAN    75 KVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFGALQQGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDRAPGSLIKLQGCRENDSRQKWEQIEGNSKLRHVGSNLCLDSRTAKSGGLSVEVCGPALSQQWKFTLNL 569
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh................hhhhhhhh..........hhhhhhh........eeeeeee...hhhhhhhhhhhhhhhhhhh.eeeeeeee.....hhhhhhhhh...eeeee....hhhhhhhhhhhhhh...eeee....eee....hhhhhhhhhhh..eeeeeeeeee......ee.....eeee.......eeee.hhhhhhhh.......ee........eeeehhhhhhh...........hhhhhhhhhhhhh..eeeeeeeeeeeee...........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhh............eeeeeee..eeee..........eeee....hhhhheee.....eee..eeee..........eeee....hhhh.eeee....eeee....eeee..hhhhh..eeee...hhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M--------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RICIN_B_LECTIN  PDB: D:456-566 UniProt: 456-566                                                                --- PROSITE
           Transcript 1 (1) Exon 1.5  PDB: D:75-125 UniProt: 74-125            --------------------------------Exon 1.7  PDB: D:158-181---------------------Exon 1.9  PDB: D:203-243 UniProt: 203-243Exon 1.10  PDB: D:244-273     ----------------------------Exon 1.12  PDB: D:302-337           -----------------------------------------Exon 1.15c  PDB: D:379-410      ---------------------------Exon 1.17  PDB: D:438-480 UniProt: 438-480 Exon 1.18  PDB: D:481-520               Exon 1.19b  PDB: D:521-569 UniProt: 521-571       Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------Exon 1.6  PDB: D:125-158          ----------------------Exon 1.8  PDB: D:181-20---------------------------------------------------------------------Exon 1.11  PDB: D:273-302     ----------------------------------Exon 1.13  PDB: D:337-379 UniProt: 337-379 ------------------------------Exon 1.16a  PDB: D:410-438   ----------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 4d0t D  75 KVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFGALQQGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDRAPGSLIKLQGCREDDSRQKWEQIEGNSKLRHVGSNLCLDSRTAKSGGLSVEVCGPALSQQWKFTLNL 569
                                    84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564

Chain E from PDB  Type:PROTEIN  Length:495
 aligned with GALT2_HUMAN | Q10471 from UniProtKB/Swiss-Prot  Length:571

    Alignment length:495
                                    84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564     
          GALT2_HUMAN    75 KVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFGALQQGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDRAPGSLIKLQGCRENDSRQKWEQIEGNSKLRHVGSNLCLDSRTAKSGGLSVEVCGPALSQQWKFTLNL 569
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh................hhhhhhhh..........hhhhhhh........eeeeeee...hhhhhhhhhhhhhhhhhhh.eeeeeeee.....hhhhhhhhh...eeeee....hhhhhhhhhhhhhh...eeee....eee....hhhhhhhhhhh..eeeeeeeeee......ee.....eeeee.....eeeee.hhhhhhhh.......ee........eeeehhhhhhh...........hhhhhhhhhhhhh..eeeeeeeeeeeee...........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhh............eeeeeee..eeee..........eeee.........eee.....eee..eeee..........eeee....hhhh.eeee....eeee....eeee..hhhhh..eeee...hhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M--------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RICIN_B_LECTIN  PDB: E:456-566 UniProt: 456-566                                                                --- PROSITE
           Transcript 1 (1) Exon 1.5  PDB: E:75-125 UniProt: 74-125            --------------------------------Exon 1.7  PDB: E:158-181---------------------Exon 1.9  PDB: E:203-243 UniProt: 203-243Exon 1.10  PDB: E:244-273     ----------------------------Exon 1.12  PDB: E:302-337           -----------------------------------------Exon 1.15c  PDB: E:379-410      ---------------------------Exon 1.17  PDB: E:438-480 UniProt: 438-480 Exon 1.18  PDB: E:481-520               Exon 1.19b  PDB: E:521-569 UniProt: 521-571       Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------Exon 1.6  PDB: E:125-158          ----------------------Exon 1.8  PDB: E:181-20---------------------------------------------------------------------Exon 1.11  PDB: E:273-302     ----------------------------------Exon 1.13  PDB: E:337-379 UniProt: 337-379 ------------------------------Exon 1.16a  PDB: E:410-438   ----------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 4d0t E  75 KVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFGALQQGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDRAPGSLIKLQGCREDDSRQKWEQIEGNSKLRHVGSNLCLDSRTAKSGGLSVEVCGPALSQQWKFTLNL 569
                                    84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564

Chain F from PDB  Type:PROTEIN  Length:487
 aligned with GALT2_HUMAN | Q10471 from UniProtKB/Swiss-Prot  Length:571

    Alignment length:491
                                    84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564 
          GALT2_HUMAN    75 KVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFGALQQGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDRAPGSLIKLQGCRENDSRQKWEQIEGNSKLRHVGSNLCLDSRTAKSGGLSVEVCGPALSQQWKF 565
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh................hhhhhhhh..........hhhhhhh........eeeeeee...hhhhhhhhhhhhhhhhhhh.eeeeeeee.....hhhhhhhhh...eeeee....hhhhhhhhhhhhhh...eeee....eee....hhhhhhhhhhh..eeeeeeeeee......ee.....eeeee.....eeeee.hhhhhhh........ee........eeeehhhhhhh...........hhhhhhhhhhhhh..eeeeeeeeeeeee............hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhh............eee..ee..eeee..........eeee....hhhhheee.....eee..eeee..........eeee....hhhh.eeee....eeee....eeee..hhhhh..eeee.----...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M----------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RICIN_B_LECTIN  PDB: F:456-565 UniProt: 456-566                                                                PROSITE
           Transcript 1 (1) Exon 1.5  PDB: F:75-125 UniProt: 74-125            --------------------------------Exon 1.7  PDB: F:158-181---------------------Exon 1.9  PDB: F:203-243 UniProt: 203-243Exon 1.10  PDB: F:244-273     ----------------------------Exon 1.12  PDB: F:302-337           -----------------------------------------Exon 1.15c  PDB: F:379-410      ---------------------------Exon 1.17  PDB: F:438-480 UniProt: 438-480 Exon 1.18  PDB: F:481-520               Exon 1.19b  PDB: F:521-565 (gaps)             Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------Exon 1.6  PDB: F:125-158          ----------------------Exon 1.8  PDB: F:181-20---------------------------------------------------------------------Exon 1.11  PDB: F:273-302     ----------------------------------Exon 1.13  PDB: F:337-379 UniProt: 337-379 ------------------------------Exon 1.16a  PDB: F:410-438   ------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 4d0t F  75 KVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFGALQQGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDRAPGSLIKLQGCREDDSRQKWEQIEGNSKLRHVGSNLCLDSRTAKSGGLSVEVC----SQQWKF 565
                                    84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554|    | 564 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          555  560

Chain P from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 4d0t P   4 DSTTPAP  10

Chain Z from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 4d0t Z   6 TTPAPT  11

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4D0T)

(no "CATH Domain" information available for 4D0T)

(no "Pfam Domain" information available for 4D0T)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (GALT2_HUMAN | Q10471)

molecular function
	GO:0030246	carbohydrate binding	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
	GO:0030145	manganese ion binding	Interacting selectively and non-covalently with manganese (Mn) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004653	polypeptide N-acetylgalactosaminyltransferase activity	Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + polypeptide = UDP + N-acetyl-D-galactosaminyl-polypeptide. This reaction is the modification of serine or threonine residues in polypeptide chains by the transfer of a N-acetylgalactose from UDP-N-acetylgalactose to the hydroxyl group of the amino acid; it is the first step in O-glycan biosynthesis.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016757	transferase activity, transferring glycosyl groups	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
	GO:0016266	O-glycan processing	The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc) to form a core O-glycan structure.
	GO:0002378	immunoglobulin biosynthetic process	The chemical reactions and pathways resulting in the formation of immunoglobulin.
	GO:0006493	protein O-linked glycosylation	A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or via the phenol group of peptidyl-tyrosine, forming an O-glycan.
	GO:0018242	protein O-linked glycosylation via serine	The glycosylation of protein via the O3 atom of peptidyl-serine, forming O3-glycosyl-L-serine; the most common forms are N-acetylgalactosaminyl, mannosyl, galactosyl, and xylosyl serine.
	GO:0018243	protein O-linked glycosylation via threonine	The glycosylation of protein via the O3 atom of peptidyl-threonine, forming O3-glycosyl-L-threonine; the most common forms are N-acetylgalactosaminyl, mannosyl, and galactosyl threonine.
	GO:0006486	protein glycosylation	A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
cellular component
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0032580	Golgi cisterna membrane	The lipid bilayer surrounding any of the thin, flattened compartments that form the central portion of the Golgi complex.
	GO:0000139	Golgi membrane	The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
	GO:0005795	Golgi stack	The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack.
	GO:0005789	endoplasmic reticulum membrane	The lipid bilayer surrounding the endoplasmic reticulum.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0030173	integral component of Golgi membrane	The component of the Golgi membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0048471	perinuclear region of cytoplasm	Cytoplasm situated near, or occurring around, the nucleus.

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	4d0t
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	2.4.1.41
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	GALT2_HUMAN \| Q10471	:	2ffu 2ffv 4d0z 4d11 5ajn 5ajo 5ajp 5fv9

4d0z	GALNAC-T2 CRYSTAL SOAKED WITH UDP-5SGALNAC, MEA2 AND MANGANESE (HIGHER RESOLUTION DATASET)
4d11	GALNAC-T2 CRYSTAL SOAKED WITH UDP-5SGALNAC, MEA2 PEPTIDE AND MANGANESE (LOWER RESOLUTION DATASET)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 23)

Sites (23, 23)

SS Bonds (30, 30)

Cis Peptide Bonds (3, 3)

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