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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN NCAM DOMAIN 1
 
Authors :  M. Kvansakul, K. Griffiths, M. Foley
Date :  27 Aug 15  (Deposition) - 13 Apr 16  (Release) - 29 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Cell Adhesion, Ncam (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Griffiths, O. Dolezal, B. Cao, S. K. Nilsson, H. B. See, K. D. G. Pfleger, M. Roche, P. R. Gorry, A. Pow, K. Viduka, K. Lim, B. G. C. Lu, D. H. C. Chang, T. Murray-Rust, M. Kvansakul, M. A. Perugini C. Dogovski, M. Doerflinger, Y. Zhang, K. Parisi, J. L. Casey, S. D. Nuttall, M. Foley
I-Bodies, Human Single Domain Antibodies That Antagonize Chemokine Receptor Cxcr4.
J. Biol. Chem. V. 291 12641 2016
PubMed-ID: 27036939  |  Reference-DOI: 10.1074/JBC.M116.721050

(-) Compounds

Molecule 1 - NEURAL CELL ADHESION MOLECULE 1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: TG1
    Expression System Taxid: 562
    Expression System Vector: PGC
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 20-116
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: N-CAM-1, NCAM-1, NCAM DOMAIN 1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1FLC-1Ligand/IonCITRATE ANION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE B:19 , VAL B:53 , ASN B:55 , THR B:61 , THR B:63 , ALA B:89 , THR B:90BINDING SITE FOR RESIDUE FLC B1100

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:22 -A:77
2B:22 -B:77

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Val A:6 -Pro A:7
2Val B:6 -Pro B:7

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AEA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AEA)

(-) Exons   (0, 0)

(no "Exon" information available for 5AEA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:100
                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeee....eeeeeeee......eeeee.............eeeeeee..eeeeee...hhhhheeeeeeee.....eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 5aea A   1 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLTPNQQRISVVWNDDSSSTLTIYNANIDDAGIYKCVVTGEDGSESEATVNVKIFQAAA 100
                                    10        20        30        40        50        60        70        80        90       100


Chain B from PDB  Type:PROTEIN  Length:98
                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eeee....eeeeeee.......eeeee.............eeee.....eeeeee...hhhhheeeeeeee....eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 5aea B   1 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLTPNQQRISVVWNDDSSSTLTIYNANIDDAGIYKCVVTGEDSESEATVNVKIFQAA  99
                                    10        20        30        40        50        60        70        80  ||    91        
                                                                                                             83|              
                                                                                                              85
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AEA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AEA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AEA)

(-) Gene Ontology  (22, 22)

Asymmetric Unit(hide GO term definitions)

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  5aea
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  NCAM1_HUMAN | P13591
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NCAM1_HUMAN | P13591: 2e3v 2haz 2vkw 2vkx 3mtr 5lkn

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5AEA)