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(-) Description

Title :  THERMOSTABILISED BETA1-ADRENOCEPTOR WITH RATIONALLY DESIGNED INVERSE AGONIST 7-METHYLCYANOPINDOLOL BOUND
 
Authors :  T. Sato, J. G. Baker, T. Warne, G. A. Brown, M. Congreve, A. G. W. Leslie, C
Date :  15 Jul 15  (Deposition) - 30 Sep 15  (Release) - 11 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Signaling Protein, Inverse Agonist (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Sato, J. Baker, T. Warne, G. Brown, A. Leslie, M. Congreve, C. Tate
Pharmacological Analysis And Structure Determination Of 7- Methylcyanopindolol-Bound Beta1-Adrenergic Receptor.
Mol. Pharmacol. V. 88 1024 2015
PubMed-ID: 26385885  |  Reference-DOI: 10.1124/MOL.115.101030

(-) Compounds

Molecule 1 - BETA1 ADRENERGIC RECEPTOR
    Cell: ERYTHROCYTE
    Chains: A
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Cell Line: HIGH FIVE
    Expression System Common: CABBAGE LOOPER
    Expression System Plasmid: PBACPAK8
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Mutation: YES
    Organism Common: TURKEY
    Organism Scientific: MELEAGRIS GALLOPAVO
    Organism Taxid: 9103
    Other Details: RESIDUES 3-32 AT THE N-TERMINUS AND RESIDUES 244-271 OF THE THIRD INTRACELLULAR LOOP WERE DELETED FROM THE CONSTRUCT. THE CONSTRUCT WAS TRUNCATED AFTER RESIDUE 367 AND A HEXAHIS TAG ADDED.

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 9)

Asymmetric/Biological Unit (4, 9)
No.NameCountTypeFull Name
1MHA1Ligand/Ion(CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETICACID
2NA2Ligand/IonSODIUM ION
3OLC5Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
4XTK1Ligand/Ion4-[(2S)-3-(TERT-BUTYLAMINO)-2-HYDROXYPROPOXY]-7-METHYL-1H-INDOLE-2-CARBONITRILE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:192 , ASP A:195 , CYS A:198 , HOH A:3009 , HOH A:3014 , HOH A:3015BINDING SITE FOR RESIDUE NA A 401
2AC2SOFTWAREASP A:87 , SER A:128 , HOH A:3003 , HOH A:3004 , HOH A:3022BINDING SITE FOR RESIDUE NA A 402
3AC3SOFTWARETRP A:117 , ASP A:121 , VAL A:122 , THR A:203 , ALA A:208 , SER A:211 , SER A:215 , TRP A:303 , PHE A:306 , PHE A:307 , ASN A:310 , ASN A:329 , TYR A:333BINDING SITE FOR RESIDUE XTK A 501
4AC4SOFTWAREGLY A:110 , SER A:111 , PRO A:196 , LYS A:287 , LYS A:290 , THR A:291 , ARG A:345 , SER A:346 , HOH A:3008 , HOH A:3026BINDING SITE FOR RESIDUE MHA A 801
5AC5SOFTWAREALA A:227 , ILE A:238 , ARG A:239 , HIS A:286 , LEU A:289 , GLY A:293 , OLC A:2002BINDING SITE FOR RESIDUE OLC A2001
6AC6SOFTWARETRP A:107 , LEU A:108 , ASP A:195 , GLY A:197 , LYS A:287 , LYS A:290 , GLY A:293 , OLC A:2001BINDING SITE FOR RESIDUE OLC A2002
7AC7SOFTWARETYR A:140BINDING SITE FOR RESIDUE OLC A2003
8AC8SOFTWAREGLN A:73 , THR A:74 , LEU A:75 , THR A:76 , ARG A:139 , ILE A:143 , ARG A:155 , GLU A:285 , ALA A:288BINDING SITE FOR RESIDUE OLC A2004
9AC9SOFTWARETRP A:181 , ASP A:184 , ASN A:204 , ARG A:205 , LYS A:276 , PHE A:315BINDING SITE FOR RESIDUE OLC A2005

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:114 -A:199
2A:192 -A:198

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5A8E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5A8E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5A8E)

(-) Exons   (0, 0)

(no "Exon" information available for 5A8E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:285
                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a8e A  36 LSQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASVWTLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIILCRSPDFRKAFK 354
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235    || 279       289       299       309       319       329       339       349     
                                                                                                                                                                                                                                      240|                                                                               
                                                                                                                                                                                                                                       275
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5A8E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5A8E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5A8E)

(-) Gene Ontology  (23, 23)

Asymmetric/Biological Unit(hide GO term definitions)

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  ADRB1_MELGA | P07700
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ADRB1_MELGA | P07700: 1dep 2vt4 2y00 2y01 2y02 2y03 2y04 2ycw 2ycx 2ycy 2ycz 3zpq 3zpr 4ami 4amj 4bvn 4gpo 5f8u

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5A8E)