2VT4 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONS AND BOUND CYANOPINDOLOL

Authors :   A. Warne, M. J. Serrano-Vega, J. G. Baker, R. Moukhametzianov, P. C. Edwards, R. Henderson, A. G. W. Leslie, C. G. Tate, G. F. X. Schertler

Date :   09 May 08 (Deposition) - 24 Jun 08 (Release) - 30 Jan 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: A  (1x)
Biol. Unit 4: B  (1x)
Biol. Unit 5: C  (1x)
Biol. Unit 6: D  (1x)

Keywords :   Gpcr, Membrane, Receptor, Palmitate, Transducer, Antagonist Bound Form, Integral Membrane Protein, G-Protein Coupled Receptor, G Protein Coupled Receptor, Thermostabilising Point Mutations, Phosphoprotein, Seven-Helix Receptor, Lipoprotein, 7Tm Receptor, Glycoprotein, Transmembrane (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Warne, M. J. Serrano-Vega, J. G. Baker, R. Moukhametzianov, P. C. Edwards, R. Henderson, A. G. W. Leslie, C. G. Tate, G. F. X. Schertler
Structure Of A Beta1-Adrenergic G-Protein-Coupled Receptor.
Nature V. 454 486 2008
PubMed-ID: 18594507 | Reference-DOI: 10.1038/NATURE07101
(for further references see the PDB file header)

Molecule 1 - BETA1 ADRENERGIC RECEPTOR
	Cell	:	ERYTHROCYTE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	TRICHOPLUSIA NI
	Expression System Cell Line	:	HIGH FIVE
	Expression System Plasmid	:	PBACPAK8
	Expression System Taxid	:	7111
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	RESIDUES 33-243,272-276,279-367
	Mutation	:	YES
	Organism Common	:	COMMON TURKEY
	Organism Scientific	:	MELEAGRIS GALLOPAVO
	Organism Taxid	:	9103
	Synonym	:	BETA-1 ADRENOCEPTOR, BETA-1 ADRENORECEPTOR, BETA-T

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:	A
Biological Unit 4 (1x)	:		B
Biological Unit 5 (1x)	:			C
Biological Unit 6 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 22)

No.	Name	Count	Type	Full Name
1	D10	2	Ligand/Ion	DECANE
2	NA	4	Ligand/Ion	SODIUM ION
3	P32	4	Ligand/Ion	4-{[(2S)-3-(TERT-BUTYLAMINO)-2-HYDROXYPROPYL]OXY}-3H-INDOLE-2-CARBONITRILE
4	SOG	12	Ligand/Ion	2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL

Biological Unit 1 (3, 9)

No.	Name	Count	Type	Full Name
1	D10	1	Ligand/Ion	DECANE
2	NA	-1	Ligand/Ion	SODIUM ION
3	P32	2	Ligand/Ion	4-{[(2S)-3-(TERT-BUTYLAMINO)-2-HYDROXYPROPYL]OXY}-3H-INDOLE-2-CARBONITRILE
4	SOG	6	Ligand/Ion	2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL

Biological Unit 2 (3, 9)

No.	Name	Count	Type	Full Name
1	D10	1	Ligand/Ion	DECANE
2	NA	-1	Ligand/Ion	SODIUM ION
3	P32	2	Ligand/Ion	4-{[(2S)-3-(TERT-BUTYLAMINO)-2-HYDROXYPROPYL]OXY}-3H-INDOLE-2-CARBONITRILE
4	SOG	6	Ligand/Ion	2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL

Biological Unit 3 (3, 5)

No.	Name	Count	Type	Full Name
1	D10	1	Ligand/Ion	DECANE
2	NA	-1	Ligand/Ion	SODIUM ION
3	P32	1	Ligand/Ion	4-{[(2S)-3-(TERT-BUTYLAMINO)-2-HYDROXYPROPYL]OXY}-3H-INDOLE-2-CARBONITRILE
4	SOG	3	Ligand/Ion	2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL

Biological Unit 4 (2, 4)

No.	Name	Count	Type	Full Name
1	D10	-1	Ligand/Ion	DECANE
2	NA	-1	Ligand/Ion	SODIUM ION
3	P32	1	Ligand/Ion	4-{[(2S)-3-(TERT-BUTYLAMINO)-2-HYDROXYPROPYL]OXY}-3H-INDOLE-2-CARBONITRILE
4	SOG	3	Ligand/Ion	2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL

Biological Unit 5 (3, 5)

No.	Name	Count	Type	Full Name
1	D10	1	Ligand/Ion	DECANE
2	NA	-1	Ligand/Ion	SODIUM ION
3	P32	1	Ligand/Ion	4-{[(2S)-3-(TERT-BUTYLAMINO)-2-HYDROXYPROPYL]OXY}-3H-INDOLE-2-CARBONITRILE
4	SOG	3	Ligand/Ion	2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL

Biological Unit 6 (2, 4)

No.	Name	Count	Type	Full Name
1	D10	-1	Ligand/Ion	DECANE
2	NA	-1	Ligand/Ion	SODIUM ION
3	P32	1	Ligand/Ion	4-{[(2S)-3-(TERT-BUTYLAMINO)-2-HYDROXYPROPYL]OXY}-3H-INDOLE-2-CARBONITRILE
4	SOG	3	Ligand/Ion	2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL

Asymmetric Unit (21, 21)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TRP A:117 , ASP A:121 , SER A:211 , SER A:215 , TRP A:303 , PHE A:306 , PHE A:307 , ASN A:310 , ASN A:329	BINDING SITE FOR RESIDUE P32 A 400
02	AC2	SOFTWARE	CYS A:192 , ASP A:195 , CYS A:198 , HOH A:2002 , HOH A:2006	BINDING SITE FOR RESIDUE NA A 401
03	AC3	SOFTWARE	TRP A:181 , ARG A:183 , GLU A:185 , ASN A:204 , ALA A:206 , TYR A:207 , THR B:164 , PRO C:196 , HOH C:2003	BINDING SITE FOR RESIDUE SOG A 402
04	AC4	SOFTWARE	PHE A:112 , GLU A:115 , LEU A:116 , SER A:119 , MET A:178 , ARG C:104 , THR C:106	BINDING SITE FOR RESIDUE SOG A 403
05	AC5	SOFTWARE	ALA A:227 , TYR A:231 , ALA A:234 , LYS A:235 , ILE A:238 , HIS A:286 , LEU A:289 , LYS A:290 , GLY A:293 , MET A:296	BINDING SITE FOR RESIDUE SOG A 405
06	AC6	SOFTWARE	ILE C:214 , ILE C:218 , ILE D:214	BINDING SITE FOR RESIDUE D10 C 406
07	AC7	SOFTWARE	TRP B:117 , ASP B:121 , VAL B:122 , ALA B:208 , SER B:211 , TRP B:303 , PHE B:306 , PHE B:307 , ASN B:310 , ASN B:329	BINDING SITE FOR RESIDUE P32 B 400
08	AC8	SOFTWARE	CYS B:192 , ASP B:195 , CYS B:198 , HOH B:2004	BINDING SITE FOR RESIDUE NA B 401
09	AC9	SOFTWARE	CYS A:163 , TRP B:181 , ALA B:206	BINDING SITE FOR RESIDUE SOG B 402
10	BC1	SOFTWARE	ARG B:157	BINDING SITE FOR RESIDUE SOG B 404
11	BC2	SOFTWARE	ALA B:227 , TYR B:231 , LYS B:235 , LEU B:289 , LYS B:290	BINDING SITE FOR RESIDUE SOG B 405
12	BC3	SOFTWARE	TRP C:117 , ASP C:121 , VAL C:122 , ALA C:208 , SER C:211 , TRP C:303 , PHE C:306 , PHE C:307 , ASN C:310 , ASN C:329	BINDING SITE FOR RESIDUE P32 C 400
13	BC4	SOFTWARE	CYS C:192 , ASP C:195 , CYS C:198 , HOH C:2005	BINDING SITE FOR RESIDUE NA C 401
14	BC5	SOFTWARE	TRP C:181 , ALA C:206 , CYS D:163	BINDING SITE FOR RESIDUE SOG C 402
15	BC6	SOFTWARE	ARG C:157 , ASP D:184 , ARG D:205	BINDING SITE FOR RESIDUE SOG C 404
16	BC7	SOFTWARE	TYR C:231 , HIS C:286 , LEU C:289 , LYS C:290 , MET C:296	BINDING SITE FOR RESIDUE SOG C 405
17	BC8	SOFTWARE	TRP D:117 , ASP D:121 , SER D:211 , SER D:215 , TRP D:303 , PHE D:306 , PHE D:307 , ASN D:310 , ASN D:329	BINDING SITE FOR RESIDUE P32 D 400
18	BC9	SOFTWARE	CYS D:192 , ASP D:195 , CYS D:198 , HOH D:2002 , HOH D:2004	BINDING SITE FOR RESIDUE NA D 401
19	CC1	SOFTWARE	PRO B:196 , TRP D:181 , ARG D:183 , GLU D:185	BINDING SITE FOR RESIDUE SOG D 402
20	CC2	SOFTWARE	ARG B:104 , THR B:106 , PHE D:112 , GLU D:115 , LEU D:116 , SER D:119 , ILE D:177 , MET D:178	BINDING SITE FOR RESIDUE SOG D 403
21	CC3	SOFTWARE	TYR D:231 , LYS D:235 , LEU D:289 , LYS D:290 , GLY D:293 , MET D:296	BINDING SITE FOR RESIDUE SOG D 405

Asymmetric Unit

No.	Residues
1	A:114	-	A:199
2	A:192	-	A:198
3	B:114	-	B:199
4	B:192	-	B:198
5	C:114	-	C:199
6	C:192	-	C:198
7	D:114	-	D:199
8	D:192	-	D:198

(no "Cis Peptide Bond" information available for 2VT4)

(no "SAP(SNP)/Variant" information available for 2VT4)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_PROTEIN_RECEP_F1_1	PS00237	G-protein coupled receptors family 1 signature.	ADRB1_MELGA	127-143	4	A:127-143 B:127-143 C:127-143 D:127-143

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_PROTEIN_RECEP_F1_1	PS00237	G-protein coupled receptors family 1 signature.	ADRB1_MELGA	127-143	2	A:127-143 B:127-143 - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_PROTEIN_RECEP_F1_1	PS00237	G-protein coupled receptors family 1 signature.	ADRB1_MELGA	127-143	2	- - C:127-143 D:127-143

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_PROTEIN_RECEP_F1_1	PS00237	G-protein coupled receptors family 1 signature.	ADRB1_MELGA	127-143	1	A:127-143 - - -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_PROTEIN_RECEP_F1_1	PS00237	G-protein coupled receptors family 1 signature.	ADRB1_MELGA	127-143	1	- B:127-143 - -

Biological Unit 5 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_PROTEIN_RECEP_F1_1	PS00237	G-protein coupled receptors family 1 signature.	ADRB1_MELGA	127-143	1	- - C:127-143 -

Biological Unit 6 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_PROTEIN_RECEP_F1_1	PS00237	G-protein coupled receptors family 1 signature.	ADRB1_MELGA	127-143	1	- - - D:127-143

(no "Exon" information available for 2VT4)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:274
 aligned with ADRB1_MELGA | P07700 from UniProtKB/Swiss-Prot  Length:483

    Alignment length:319
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349         
          ADRB1_MELGA    40 WEAGMSLLMALVVLLIVAGNVLVIAAIGRTQRLQTLTNLFITSLACADLVMGLLVVPFGATLVVRGTWLWGSFLCECWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVYLRVYREAKEQIRKIDRCEGRFYGSQEQPQPPPLPQHQPILGNGRASKRKTSRVMAMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVFFNWLGYANSAFNPIIYCRSPDFRKAFKRLLC 358
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2vt4A00 A:40-358 Rhopdopsin 7-helix transmembrane proteins                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..---------------------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------G_PROTEIN_RECEP_F----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vt4 A  40 WEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQI---------------------------------------------REHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYCRSPDFRKAFKRLLA 358
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229        |-         -         -         -         -    |  289       299       309       319       329       339       349         
                                                                                                                                                                                                                                238                                           284

Chain B from PDB  Type:PROTEIN  Length:276
 aligned with ADRB1_MELGA | P07700 from UniProtKB/Swiss-Prot  Length:483

    Alignment length:321
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358 
          ADRB1_MELGA    39 QWEAGMSLLMALVVLLIVAGNVLVIAAIGRTQRLQTLTNLFITSLACADLVMGLLVVPFGATLVVRGTWLWGSFLCECWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVYLRVYREAKEQIRKIDRCEGRFYGSQEQPQPPPLPQHQPILGNGRASKRKTSRVMAMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVFFNWLGYANSAFNPIIYCRSPDFRKAFKRLLCF 359
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2vt4B00 B:39-359 Rhopdopsin 7-helix transmembrane proteins                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..---------------------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------G_PROTEIN_RECEP_F------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vt4 B  39 QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQI---------------------------------------------REHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYCRSPDFRKAFKRLLAF 359
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238         -         -         -         -     | 288       298       308       318       328       338       348       358 
                                                                                                                                                                                                                                 238                                           284

Chain C from PDB  Type:PROTEIN  Length:263
 aligned with ADRB1_MELGA | P07700 from UniProtKB/Swiss-Prot  Length:483

    Alignment length:308
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338        
          ADRB1_MELGA    39 QWEAGMSLLMALVVLLIVAGNVLVIAAIGRTQRLQTLTNLFITSLACADLVMGLLVVPFGATLVVRGTWLWGSFLCECWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVYLRVYREAKEQIRKIDRCEGRFYGSQEQPQPPPLPQHQPILGNGRASKRKTSRVMAMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVFFNWLGYANSAFNPIIYCRS 346
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2vt4C00 C:39-346 Rhopdopsin 7-helix transmembrane proteins                                                                                                                                                                                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..---------------------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------G_PROTEIN_RECEP_F----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vt4 C  39 QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQI---------------------------------------------REHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYCRS 346
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238         -         -         -         -     | 288       298       308       318       328       338        
                                                                                                                                                                                                                                 238                                           284

Chain D from PDB  Type:PROTEIN  Length:272
 aligned with ADRB1_MELGA | P07700 from UniProtKB/Swiss-Prot  Length:483

    Alignment length:317
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       
          ADRB1_MELGA    41 EAGMSLLMALVVLLIVAGNVLVIAAIGRTQRLQTLTNLFITSLACADLVMGLLVVPFGATLVVRGTWLWGSFLCECWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVYLRVYREAKEQIRKIDRCEGRFYGSQEQPQPPPLPQHQPILGNGRASKRKTSRVMAMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVFFNWLGYANSAFNPIIYCRSPDFRKAFKRLL 357
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2vt4D00 D:41-357 Rhopdopsin 7-helix transmembrane proteins                                                                                                                                                                                                                                                                    CATH domains
           Pfam domains (1) -----------------7tm_1-2vt4D01 D:58-343                                                                                                                                                                                                                                                                        -------------- Pfam domains (1)
           Pfam domains (2) -----------------7tm_1-2vt4D02 D:58-343                                                                                                                                                                                                                                                                        -------------- Pfam domains (2)
           Pfam domains (3) -----------------7tm_1-2vt4D03 D:58-343                                                                                                                                                                                                                                                                        -------------- Pfam domains (3)
           Pfam domains (4) -----------------7tm_1-2vt4D04 D:58-343                                                                                                                                                                                                                                                                        -------------- Pfam domains (4)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..---------------------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------G_PROTEIN_RECEP_F---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vt4 D  41 EAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQI---------------------------------------------REHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYCRSPDFRKAFKRLL 357
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       | -         -         -         -         -   |   290       300       310       320       330       340       350       
                                                                                                                                                                                                                               238                                           284

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2VT4)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: Rhopdopsin 7-helix transmembrane proteins (128)

Homologous Superfamily: Rhopdopsin 7-helix transmembrane proteins (128)

Common turkey (Meleagris gallopavo) (1)

1a	2vt4C00	C:39-346
1b	2vt4D00	D:41-357
1c	2vt4A00	A:40-358
1d	2vt4B00	B:39-359

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: GPCR_A (90)

Family: 7tm_1 (47)

Meleagris gallopavo (Common turkey) (10)

1a	7tm_1-2vt4D01	D:58-343
1b	7tm_1-2vt4D02	D:58-343
1c	7tm_1-2vt4D03	D:58-343
1d	7tm_1-2vt4D04	D:58-343

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (ADRB1_MELGA | P07700)

molecular function
	GO:0004930	G-protein coupled receptor activity	Combining with an extracellular signal and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.
	GO:0005088	Ras guanyl-nucleotide exchange factor activity	Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Ras superfamily. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
	GO:0004935	adrenergic receptor activity	Combining with epinephrine or norepinephrine and transmitting the signal across the membrane by activating the alpha-subunit of an associated heterotrimeric G-protein complex.
	GO:0004940	beta1-adrenergic receptor activity	Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of beta1-adrenergic receptors.
	GO:0008144	drug binding	Interacting selectively and non-covalently with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
	GO:0004871	signal transducer activity	Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
	GO:0005057	signal transducer activity, downstream of receptor	Conveys a signal from an upstream receptor or intracellular signal transducer, converting the signal into a form where it can ultimately trigger a change in the state or activity of a cell.
	GO:0031402	sodium ion binding	Interacting selectively and non-covalently with sodium ions (Na+).
	GO:0050824	water binding	Interacting selectively and non-covalently with water (H2O).
biological process
	GO:0007186	G-protein coupled receptor signaling pathway	A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576).
	GO:0007189	adenylate cyclase-activating G-protein coupled receptor signaling pathway	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, where the pathway proceeds through activation of adenylyl cyclase activity and a subsequent increase in the concentration of cyclic AMP (cAMP).
	GO:0071880	adenylate cyclase-activating adrenergic receptor signaling pathway	The series of molecular signals generated as a consequence of an adrenergic receptor binding to its physiological ligand, where the pathway proceeds with activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP (cAMP).
	GO:0043547	positive regulation of GTPase activity	Any process that activates or increases the activity of a GTPase.
	GO:0030819	positive regulation of cAMP biosynthetic process	Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate).
	GO:0043950	positive regulation of cAMP-mediated signaling	Any process which activates, maintains or increases the frequency, rate or extent of cAMP-mediated signaling, a series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response.
	GO:0045823	positive regulation of heart contraction	Any process that activates or increases the frequency, rate or extent of heart contraction.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
	GO:0005769	early endosome	A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.
	GO:0005768	endosome	A vacuole to which materials ingested by endocytosis are delivered.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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	2vt4
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	ADRB1_MELGA \| P07700
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	ADRB1_MELGA \| P07700
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1dep	MEMBRANE PROTEIN, NMR, 1 STRUCTURE
2r4r	CRYSTAL STRUCTURE OF THE HUMAN BETA2 ADRENOCEPTOR
2r4s	CRYSTAL STRUCTURE OF THE HUMAN BETA2 ADRENOCEPTOR
2rh1	HIGH RESOLUTION CRYSTAL STRUCTURE OF HUMAN B2-ADRENERGIC G PROTEIN- COUPLED RECEPTOR

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 22)

Sites (21, 21)

SS Bonds (8, 8)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (0, 0)

CATH Domains (1, 4)

Pfam Domains (1, 4)

Gene Ontology (23, 23)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

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