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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ATTTM3 PRODUCT COMPLEX WITH TWO ORTHOPHOSPHATES AND MANGANESE IONS (FORM B)
 
Authors :  J. Martinez, V. Truffault, M. Hothorn
Date :  24 Jun 15  (Deposition) - 05 Aug 15  (Release) - 07 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.67
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Inorganic Polyphosphate, Tripolyphosphate, Triphosphate Tunnel Metalloenzyme (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Martinez, V. Truffault, M. Hothorn
Structural Determinants For Substrate Binding And Catalysis In Triphosphate Tunnel Metalloenzymes.
J. Biol. Chem. V. 290 23348 2015
PubMed-ID: 26221030  |  Reference-DOI: 10.1074/JBC.M115.674473

(-) Compounds

Molecule 1 - TRIPHOSPHATE TUNEL METALLOENZYME 3
    Chains: A
    EC Number: 3.6.1.3, 3.6.1.25
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETM11
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: RIL
    Expression System Vector Type: PLASMID
    Organism Common: THALE CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Strain: COL0
    Synonym: ADENOSINETRIPHOSPHATASE, ATPASE, TRIPHOSPHATASE, PPPASE, INORGANIC TRIPHOSPHATASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1MN3Ligand/IonMANGANESE (II) ION
2PO42Ligand/IonPHOSPHATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:2 , GLU A:4 , GLU A:169 , GLU A:171 , MN A:501 , MN A:502 , PO4 A:1000 , HOH A:2009BINDING SITE FOR RESIDUE MN A 500
2AC2SOFTWAREGLU A:4 , GLU A:169 , MN A:500 , PO4 A:1000 , PO4 A:1001 , HOH A:2046 , HOH A:2093BINDING SITE FOR RESIDUE MN A 501
3AC3SOFTWAREGLU A:2 , GLU A:90 , MN A:500 , PO4 A:1000 , HOH A:2005 , HOH A:2048BINDING SITE FOR RESIDUE MN A 502
4AC4SOFTWAREGLU A:2 , GLU A:4 , ARG A:52 , ARG A:54 , LYS A:76 , ARG A:143 , GLU A:169 , GLU A:171 , MN A:500 , MN A:501 , MN A:502 , PO4 A:1001 , HOH A:2005 , HOH A:2046 , HOH A:2048 , HOH A:2049 , HOH A:2093BINDING SITE FOR RESIDUE PO4 A1000
5AC5SOFTWAREGLU A:4 , LYS A:6 , GLU A:169 , THR A:199 , LYS A:200 , MN A:501 , PO4 A:1000 , HOH A:2046 , HOH A:2093 , HOH A:2133BINDING SITE FOR RESIDUE PO4 A1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5A68)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5A68)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5A68)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5A68)

(-) Exons   (0, 0)

(no "Exon" information available for 5A68)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee.hhhhhhhhhhhh...eeeeeeeeeeeee...hhhhhh.eeeeeeeeee.....eeeeeeeeeeeee..eeeeeeeeeeehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.......eeeeeeeeeeeeeee..eeeeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhh.........hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a68 A  -1 GAMEVEVKLRLLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKTMIEEFLTEEKIEFSNSDMTKFAVFRSG 207
                                     8        18        28        38        48        58||      74        84        94       104       114       124       134       144       154       164       174       184       194       204   
                                                                                       59|                                                                                                                                             
                                                                                        66
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5A68)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5A68)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5A68)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  5a68
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  3.6.1.25
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TTM3_ARATH | Q9SIY3: 3v85 5a5y 5a66 5a67

(-) Related Entries Specified in the PDB File

5a5y CRYSTAL STRUCTURE OF ATTTM3 IN COMPLEX WITH TRIPOLYPHOSPHATE AND MAGNESIUM ION (FORM A)
5a60 CRYSTAL STRUCTURE OF FULL-LENGTH E. COLI YGIF IN COMPLEX WITH TRIPOLYPHOSPHATE AND TWO MAGNESIUM IONS
5a61 CRYSTAL STRUCTURE OF FULL-LENGTH E. COLI YGIF IN COMPLEX WITH TRIPOLYPHOSPHATE AND TWO MANGANESE IONS.
5a64 CRYSTAL STRUCTURE OF MOUSE THIAMINE TRIPHOSPHATASE IN COMPLEX WITH THIAMINE TRIPHOSPHATE.
5a65 CRYSTAL STRUCTURE OF MOUSE THIAMINE TRIPHOSPHATASE IN COMPLEX WITH THIAMINE DIPHOSPHATE, ORTHOPHOSPHATE AND MAGNESIUM IONS.
5a66 CRYSTAL STRUCTURE OF ATTTM3 IN COMPLEX WITH TRIPOLYPHOSPHATE AND MANGANESE ION (FORM A)
5a67 CRYSTAL STRUCTURE OF ATTTM3 IN COMPLEX WITH TRIPOLYPHOSPHATE AND MANGANESE ION (FORM B)