5A5Y - JenaLib

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Title :   CRYSTAL STRUCTURE OF ATTTM3 IN COMPLEX WITH TRIPOLYPHOSPHATE AND MAGNESIUM ION (FORM A)

Authors :   J. Martinez, V. Truffault, M. Hothorn

Date :   23 Jun 15 (Deposition) - 05 Aug 15 (Release) - 07 Oct 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.92

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Hydrolase, Inorganic Polyphosphate, Tripolyphosphate, Triphosphate Tunnel Metalloenzyme (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Martinez, V. Truffault, M. Hothorn
Structural Determinants For Substrate Binding And Catalysis In Triphosphate Tunnel Metalloenzymes.
J. Biol. Chem. V. 290 23348 2015
PubMed-ID: 26221030 | Reference-DOI: 10.1074/JBC.M115.674473

Molecule 1 - TRIPHOSPHATE TUNEL METALLOENZYME 3
	Chains	:	A, B
	EC Number	:	3.6.1.3, 3.6.1.25
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PETM11
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	RIL
	Expression System Vector Type	:	PLASMID
	Organism Common	:	THALE CRESS
	Organism Scientific	:	ARABIDOPSIS THALIANA
	Organism Taxid	:	3702
	Strain	:	COL0
	Synonym	:	ADENOSINETRIPHOSPHATASE, ATPASE, TRIPHOSPHATASE, PPPASE, INORGANIC TRIPHOSPHATASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 16)

No.	Name	Count	Type	Full Name
1	3PO	2	Ligand/Ion	TRIPHOSPHATE
2	EDO	12	Ligand/Ion	1,2-ETHANEDIOL
3	MG	2	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (2, 8)

No.	Name	Count	Type	Full Name
1	3PO	1	Ligand/Ion	TRIPHOSPHATE
2	EDO	7	Ligand/Ion	1,2-ETHANEDIOL
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (2, 6)

No.	Name	Count	Type	Full Name
1	3PO	1	Ligand/Ion	TRIPHOSPHATE
2	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:4 , GLU A:169 , 3PO A:1000	BINDING SITE FOR RESIDUE MG A 500
02	AC2	SOFTWARE	GLU A:4 , LYS A:6 , ARG A:52 , ARG A:54 , LYS A:76 , ARG A:143 , GLU A:169 , THR A:199 , LYS A:200 , MG A:500 , HOH A:2003 , HOH A:2024 , HOH A:2036 , HOH A:2048 , HOH A:2109	BINDING SITE FOR RESIDUE 3PO A1000
03	AC3	SOFTWARE	PHE A:55 , TYR A:97 , LYS A:101 , EDO A:1106	BINDING SITE FOR RESIDUE EDO A1100
04	AC4	SOFTWARE	ARG A:8 , LEU A:9 , ASN A:164 , CYS A:165 , TYR A:166	BINDING SITE FOR RESIDUE EDO A1101
05	AC5	SOFTWARE	PHE A:37 , ASP A:38 , SER A:45 , ALA A:49 , LEU A:51 , PHE A:201	BINDING SITE FOR RESIDUE EDO A1102
06	AC6	SOFTWARE	ASP A:112 , ILE A:113	BINDING SITE FOR RESIDUE EDO A1103
07	AC7	SOFTWARE	ALA A:13 , ALA A:14 , SER A:106 , LYS A:190 , GLU A:192 , HOH A:2065 , HOH A:2067	BINDING SITE FOR RESIDUE EDO A1104
08	AC8	SOFTWARE	GLU A:174 , PRO A:175 , GLU A:176 , ARG A:177	BINDING SITE FOR RESIDUE EDO A1105
09	AC9	SOFTWARE	HIS A:31 , PHE A:55 , PRO A:69 , EDO A:1100	BINDING SITE FOR RESIDUE EDO A1106
10	BC1	SOFTWARE	GLU B:4 , GLU B:169 , 3PO B:1000	BINDING SITE FOR RESIDUE MG B 500
11	BC2	SOFTWARE	GLU B:4 , LYS B:6 , ARG B:52 , ARG B:54 , LYS B:76 , ARG B:143 , GLU B:169 , THR B:199 , LYS B:200 , MG B:500 , HOH B:2002 , HOH B:2003 , HOH B:2005 , HOH B:2030 , HOH B:2044 , HOH B:2048 , HOH B:2119 , HOH B:2123	BINDING SITE FOR RESIDUE 3PO B1000
12	BC3	SOFTWARE	GLU B:174 , PRO B:175 , GLU B:176 , ARG B:177	BINDING SITE FOR RESIDUE EDO B1100
13	BC4	SOFTWARE	GLY B:138 , TYR B:160 , ASP B:161 , PHE B:204	BINDING SITE FOR RESIDUE EDO B1101
14	BC5	SOFTWARE	PRO A:24 , HIS A:26 , PRO B:24 , TYR B:25 , ARG B:149 , HOH B:2125	BINDING SITE FOR RESIDUE EDO B1102
15	BC6	SOFTWARE	ASN B:164	BINDING SITE FOR RESIDUE EDO B1103
16	BC7	SOFTWARE	ARG A:149 , MET A:181 , HOH A:2087 , ARG B:177	BINDING SITE FOR RESIDUE EDO B1104

(no "SS Bond" information available for 5A5Y)

(no "Cis Peptide Bond" information available for 5A5Y)

(no "SAP(SNP)/Variant" information available for 5A5Y)

(no "PROSITE Motif" information available for 5A5Y)

(no "Exon" information available for 5A5Y)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee.hhhhhhhhhhhhh..eeeeeeeeeeeee...hhhhhh.eeeeeeeeee...........eeeeeeeeeeeee..eeeeeeeeeeehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.......eeeeeeeeeeeeeee..eeeeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhhh........hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a5y A   0 AMEVEVKLRLLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAAVSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKTMIEEFLTEEKIEFSNSDMTKFAVFRSGKLP 210
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209

Chain B from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee.hhhhhhhhhhhhh..eeeeeeeeeeeee...hhhhhh.eeeeeeeeee...........eeeeeeeeeeeee..eeeeeeeeeeehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.......eeeeeeeeeeeeeee..eeeeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhh.........hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a5y B   0 AMEVEVKLRLLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAAVSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKTMIEEFLTEEKIEFSNSDMTKFAVFRSGKLP 210
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5A5Y)

(no "CATH Domain" information available for 5A5Y)

(no "Pfam Domain" information available for 5A5Y)

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	3.6.1.25
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	3.6.1.3
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	TTM3_ARATH \| Q9SIY3	:	3v85 5a66 5a67 5a68

5a60	CRYSTAL STRUCTURE OF FULL-LENGTH E. COLI YGIF IN COMPLEX WITH TRIPOLYPHOSPHATE AND TWO MAGNESIUM IONS
5a61	CRYSTAL STRUCTURE OF FULL-LENGTH E. COLI YGIF IN COMPLEX WITH TRIPOLYPHOSPHATE AND TWO MANGANESE IONS.
5a64	CRYSTAL STRUCTURE OF MOUSE THIAMINE TRIPHOSPHATASE IN COMPLEX WITH THIAMINE TRIPHOSPHATE.
5a65	CRYSTAL STRUCTURE OF MOUSE THIAMINE TRIPHOSPHATASE IN COMPLEX WITH THIAMINE DIPHOSPHATE, ORTHOPHOSPHATE AND MAGNESIUM IONS.
5a66	CRYSTAL STRUCTURE OF ATTTM3 IN COMPLEX WITH TRIPOLYPHOSPHATE AND MANGANESE ION (FORM A)
5a67	CRYSTAL STRUCTURE OF ATTTM3 IN COMPLEX WITH TRIPOLYPHOSPHATE AND MANGANESE ION (FORM B)
5a68	CRYSTAL STRUCTURE OF THE ATTTM3 PRODUCT COMPLEX WITH TWO ORTHOPHOSPHATES AND MANGANESE IONS (FORM B)

Description

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Ligands, Modified Residues, Ions (3, 16)

Sites (16, 16)

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