5A60 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF FULL-LENGTH E. COLI YGIF IN COMPLEX WITH TRIPOLYPHOSPHATE AND TWO MAGNESIUM IONS

Authors :   J. Martinez, V. Truffault, M. Hothorn

Date :   23 Jun 15 (Deposition) - 05 Aug 15 (Release) - 07 Oct 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.82

Chains :   Asym./Biol. Unit : A

Keywords :   Hydrolase, Inorganic Polyphosphate, Tripolyphosphate, Triphosphate Tunnel Metalloenzymes (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Martinez, V. Truffault, M. Hothorn
Structural Determinants For Substrate Binding And Catalysis In Triphosphate Tunnel Metalloenzymes.
J. Biol. Chem. V. 290 23348 2015
PubMed-ID: 26221030 | Reference-DOI: 10.1074/JBC.M115.674473

Molecule 1 - INORGANIC TRIPHOSPHATASE
	Chains	:	A
	EC Number	:	3.6.1.25
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PETM11
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	RIL
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	ESCHERICHIA COLI K-12
	Organism Taxid	:	83333

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 5)

No.	Name	Count	Type	Full Name
1	3PO	1	Ligand/Ion	TRIPHOSPHATE
2	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
3	MG	2	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:6 , GLU A:160 , MG A:501 , 3PO A:1000	BINDING SITE FOR RESIDUE MG A 500
2	AC2	SOFTWARE	GLU A:4 , GLU A:6 , GLU A:162 , MG A:500 , 3PO A:1000 , HOH A:3003 , HOH A:3008	BINDING SITE FOR RESIDUE MG A 501
3	AC3	SOFTWARE	GLU A:4 , GLU A:6 , LYS A:8 , ARG A:56 , ARG A:58 , LYS A:69 , ARG A:81 , PHE A:124 , ARG A:126 , GLU A:160 , SER A:190 , LYS A:191 , MG A:500 , MG A:501 , HOH A:3004 , HOH A:3033 , HOH A:3034	BINDING SITE FOR RESIDUE 3PO A1000
4	AC4	SOFTWARE	GLU A:252 , ARG A:402 , HIS A:403 , ALA A:406 , HOH A:3218	BINDING SITE FOR RESIDUE EDO A2001
5	AC5	SOFTWARE	GLU A:17 , ARG A:348 , HIS A:349 , ARG A:371 , ARG A:374 , HOH A:3233	BINDING SITE FOR RESIDUE EDO A2002

(no "SS Bond" information available for 5A60)

(no "Cis Peptide Bond" information available for 5A60)

(no "SAP(SNP)/Variant" information available for 5A60)

(no "PROSITE Motif" information available for 5A60)

(no "Exon" information available for 5A60)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:429
                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee...hhhhhhhhhh.....................hhhhhh.....................eee..eeeeeeeeeee.....hhhhhhhhhh.......hhhhhh..................................................hhhhhhhhhhhhh....eee...hhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a60 A   0 AMAQEIELKFIVNHSAVEALRDHLNTLGGEHHDPVQLLNIYYETPDNWLRGHDMGLRIRGENGRYEMTMKVAGRVTGGLHQRPEYNVALSEPTLDLAQLPTEVWPNGELPADLASRVQPLFSTDFYREKWLVAVDDSRIEIALDQGEVKAGEFAEPICELELELLSGDTRAVLKLANQLVSQTGLRQGSLSKAARGYHLAQGNPAREIKPTTILHVAAKADVEQGLEAAFELALAQWQYHEELWVRGNDAAKEQVLAAIGLVRHALMLFGGIVPRKASTHLRDLLTQCEATIASAVSAVTAVYSTETAMAKLALTEWLVSKAWQPFLDAKAQGKISDSFKRFADIHLSRHAAELKSVFCQPLGDRYHDQLPRLTRDIDSILLLAGYYDPVVAQAWLENWQGLRHAIATGQRIEIEHFRNEANNQEPFWL 428
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5A60)

(no "CATH Domain" information available for 5A60)

(no "Pfam Domain" information available for 5A60)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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		AC5	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 5a60)

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	5a60
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	V8FJJ2_ECOLX \| V8FJJ2
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	3.6.1.25
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UniProtKB/Swiss-Prot
	3PASE_ECOLI \| P30871	:	5a61
	V8FJJ2_ECOLX \| V8FJJ2	:	5a61

5a5y	CRYSTAL STRUCTURE OF ATTTM3 IN COMPLEX WITH TRIPOLYPHOSPHATE AND MAGNESIUM ION (FORM A)
5a61	CRYSTAL STRUCTURE OF FULL-LENGTH E. COLI YGIF IN COMPLEX WITH TRIPOLYPHOSPHATE AND TWO MANGANESE IONS.
5a64	CRYSTAL STRUCTURE OF MOUSE THIAMINE TRIPHOSPHATASE IN COMPLEX WITH THIAMINE TRIPHOSPHATE.
5a65	CRYSTAL STRUCTURE OF MOUSE THIAMINE TRIPHOSPHATASE IN COMPLEX WITH THIAMINE DIPHOSPHATE, ORTHOPHOSPHATE AND MAGNESIUM IONS.
5a66	CRYSTAL STRUCTURE OF ATTTM3 IN COMPLEX WITH TRIPOLYPHOSPHATE AND MANGANESE ION (FORM A)
5a67	CRYSTAL STRUCTURE OF ATTTM3 IN COMPLEX WITH TRIPOLYPHOSPHATE AND MANGANESE ION (FORM B)
5a68	CRYSTAL STRUCTURE OF THE ATTTM3 PRODUCT COMPLEX WITH TWO ORTHOPHOSPHATES AND MANGANESE IONS (FORM B)

Description

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Ligands, Modified Residues, Ions (3, 5)

Sites (5, 5)

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