5A1I - JenaLib

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Title :   THE STRUCTURE OF HUMAB MAT2A IN COMPLEX WITH SAME, ADENOSINE, METHIONINE AND PPNP.

Authors :   B. Murray, S. V. Antonyuk, A. Marina, S. C. Lu, J. M. Mato, S. S. Hasnain, A

Date :   30 Apr 15 (Deposition) - 09 Mar 16 (Release) - 09 Mar 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.09

Chains :   Asym. Unit : A
Biol. Unit 1: A  (4x)

Keywords :   Transferase, Methionine Adenosyltransferase, Cell Growth, Liver Cancer, Methylation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. Murray, S. V. Antonyuk, A. Marina, S. C. Lu, J. M. Mato, S. S. Hasnain, A. L. Rojas
Crystallography Captures Catalytic Steps In Human Methionine Adenosyltransferase Enzymes.
Proc. Natl. Acad. Sci. Usa V. 113 2104 2016
PubMed-ID: 26858410 | Reference-DOI: 10.1073/PNAS.1510959113

Molecule 1 - S-ADENOSYLMETHIONINE SYNTHASE ISOFORM TYPE-2
	Chains	:	A
	EC Number	:	2.5.1.6
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PNIC28-BSA4
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	ADOMET SYNTHASE 2, METHIONINE ADENOSYLTRANSFERASE 2, MAT 2, METHIONINE ADENOSYLTRANSFERASE II, MAT-II, METHIONINE ADENOSYLTRANSFERASE 2A

		1
Asymmetric Unit	:	A
Biological Unit 1 (4x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (9, 11)

No.	Name	Count	Type	Full Name
1	ADN	1	Ligand/Ion	ADENOSINE
2	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
3	K	2	Ligand/Ion	POTASSIUM ION
4	MET	1	Mod. Amino Acid	METHIONINE
5	MG	2	Ligand/Ion	MAGNESIUM ION
6	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
7	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL
8	PPK	1	Ligand/Ion	(DIPHOSPHONO)AMINOPHOSPHONIC ACID
9	SAM	1	Ligand/Ion	S-ADENOSYLMETHIONINE

Biological Unit 1 (7, 28)

No.	Name	Count	Type	Full Name
1	ADN	4	Ligand/Ion	ADENOSINE
2	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
3	K	-1	Ligand/Ion	POTASSIUM ION
4	MET	4	Mod. Amino Acid	METHIONINE
5	MG	-1	Ligand/Ion	MAGNESIUM ION
6	PEG	4	Ligand/Ion	DI(HYDROXYETHYL)ETHER
7	PG4	4	Ligand/Ion	TETRAETHYLENE GLYCOL
8	PPK	4	Ligand/Ion	(DIPHOSPHONO)AMINOPHOSPHONIC ACID
9	SAM	4	Ligand/Ion	S-ADENOSYLMETHIONINE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:29 , ASP A:31 , ASP A:134 , LYS A:181 , ARG A:264 , LYS A:265 , ALA A:281 , LYS A:285 , ASP A:291 , MG A:401 , MG A:402 , K A:403 , SAM A:405 , HOH A:1047 , HOH A:1057 , HOH A:1109 , HOH A:1278 , HOH A:1279 , HOH A:1330 , HOH A:1362 , HOH A:1395	BINDING SITE FOR RESIDUE PPK A 400
2	AC2	SOFTWARE	ASP A:31 , LYS A:265 , PPK A:400 , HOH A:1047 , HOH A:1278	BINDING SITE FOR RESIDUE MG A 401
3	AC3	SOFTWARE	PPK A:400 , HOH A:1057 , HOH A:1279 , HOH A:1330	BINDING SITE FOR RESIDUE MG A 402
4	AC4	SOFTWARE	GLU A:57 , ASP A:258 , ALA A:259 , PPK A:400 , HOH A:1441	BINDING SITE FOR RESIDUE K A 403
5	AC5	SOFTWARE	MET A:138 , PHE A:139 , HIS A:277 , GLY A:278 , HOH A:1067	BINDING SITE FOR RESIDUE K A 404
6	AC6	SOFTWARE	HIS A:29 , PRO A:30 , ALA A:55 , GLU A:70 , GLN A:113 , ASP A:116 , ILE A:117 , ASP A:134 , ASP A:179 , LYS A:181 , SER A:247 , ARG A:249 , PHE A:250 , ASP A:258 , LYS A:289 , PPK A:400 , HOH A:1021 , HOH A:1037 , HOH A:1084 , HOH A:1362 , HOH A:1442 , HOH A:1443	BINDING SITE FOR RESIDUE SAM A 405
7	AC7	SOFTWARE	LYS A:350 , LYS A:351 , ASN A:352 , PHE A:353 , HOH A:1197	BINDING SITE FOR RESIDUE PEG A 408
8	AC8	SOFTWARE	GLN A:190 , GLY A:193 , ARG A:313 , PHE A:333 , TYR A:335 , HOH A:1591	BINDING SITE FOR RESIDUE PG4 A 412

(no "SS Bond" information available for 5A1I)

(no "Cis Peptide Bond" information available for 5A1I)

(no "SAP(SNP)/Variant" information available for 5A1I)

(no "PROSITE Motif" information available for 5A1I)

(no "Exon" information available for 5A1I)

Asymmetric Unit

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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:382
                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee...hhhhhhhhhhhhhhhhhhhhh...eeeeeeeee..eeeeeeeee.....hhhhhhhhhhhhhh.eehhhhee....eeeeeee..hhhhhhhhh...hhhhh.....eeeeeeee.......hhhhhhhhhhhhhhhhhhhh.....eeeeeeeeeeeeeeee..eeeeeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh....eeee........hhhhh..ee...........................hhhhhhhhhhhhhhhhhhhh....eeeeeeee........eeeee.......hhhhhhhhhhhhh..hhhhhhhhh.....hhhhhh.........hhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a1i A  15 EGTFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVHLDRNEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKPIYQRTAAYGHFGRDSFPWEVPKKLKYM 406
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394||
                                                                                                                                                                                                                                                                                                                                                                                                                      395|
                                                                                                                                                                                                                                                                                                                                                                                                                       406

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5A1I)

(no "CATH Domain" information available for 5A1I)

(no "Pfam Domain" information available for 5A1I)

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	5a1i
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	2.5.1.6
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	METK2_HUMAN \| P31153	:	2p02 4ktt 4ktv 4ndn 5a19 5a1g 5ugh

5a19	THE STRUCTURE OF MAT2A IN COMPLEX WITH PPNP.
5a1g	THE STRUCTURE OF HUMAN MAT2A IN COMPLEX WITH S- ADENOSYLETHIONINE AND PPNP.

Description

Compounds

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Ligands, Modified Residues, Ions (9, 11)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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