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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN NEUTROPHIL ELASTASE IN COMPLEX WITH A DIHYDROPYRIMIDONE INHIBITOR
 
Authors :  F. Vonnussbaum, V. M. -J. Li, S. Allerheiligen, S. Anlauf, L. Baerfacke M. Bechem, M. Delbeck, M. F. Fitzgerald, M. Gerisch, H. Gielen-Haertw H. Haning, D. Karthaus, D. Lang, K. Lustig, D. Meibom, J. Mittendorf, U. Rosentreter, M. Schaefer, S. Schaefer, J. Schamberger, L. A. Telan A. Tersteegen
Date :  17 Apr 15  (Deposition) - 19 Aug 15  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.23
Chains :  Asym./Biol. Unit :  A
Keywords :  Trypsin Family Fold, Protease, Hydrolase, Hydrolase- Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Von Nussbaum, V. M. Li, S. Allerheiligen, S. Anlauf, L. Barfacker, M. Bechem, M. Delbeck, M. F. Fitzgerald, M. Gerisch, H. Gielen-Haertwig, H. Haning, D. Karthaus, D. Lang, K. Lustig, D. Meibom, J. Mittendorf, U. Rosentreter, M. Schafer, S. Schafer, J. Schamberger, L. A. Telan, A. Tersteegen
Freezing The Bioactive Conformation To Boost Potency: The Identification Of Bay 85-8501, A Selective And Potent Inhibitor Of Human Neutrophil Elastase For Pulmonary Diseases.
Chemmedchem V. 10 1163 2015
PubMed-ID: 26083237  |  Reference-DOI: 10.1002/CMDC.201500131

(-) Compounds

Molecule 1 - NEUTROPHIL ELASTASE
    Chains: A
    EC Number: 3.4.21.37
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BONE MARROW SERINE PROTEASE, ELASTASE-2, HUMAN LEUKOCYTE EL ASTASE, HLE, MEDULLASIN, PMN ELASTASE, ELASTASE, HLE, MEDULIASIN, PMN ELASTASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1DMS1Ligand/IonDIMETHYL SULFOXIDE
2FUC2Ligand/IonALPHA-L-FUCOSE
3JJX1Ligand/Ion(4R)-4-(4-CYANOPHENYL)-6-METHYL-2-OXIDANYLIDENE-3-[2-OXIDANYLIDENE-2-(4-PROPAN-2-YLPIPERAZIN-1-YL)ETHYL]-1-[3-(TRIFLUOROMETHYL)PHENYL]-4H-PYRIMIDINE-5-CARBONITRILE
4NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARENAG A:401 , FUC A:402BINDING SITE FOR RESIDUE NAG A 403
2AC2SOFTWAREHIS A:57 , TYR A:94 , LEU A:99 , ASP A:102 , VAL A:190 , CYS A:191 , PHE A:192 , ASP A:194 , SER A:195 , ALA A:213 , SER A:214 , PHE A:215 , VAL A:216 , GLY A:218 , LEU A:223 , TYR A:224 , DMS A:1002 , HOH A:2070BINDING SITE FOR RESIDUE JJX A 1001
3AC3SOFTWAREGLY A:218 , GLY A:219 , JJX A:1001 , HOH A:2060BINDING SITE FOR RESIDUE DMS A 1002
4AC4SOFTWAREARG A:63B , VAL A:64 , ARG A:65 , ALA A:84 , ASN A:109Binding site for Poly-Saccharide residues NAG A 411 through FUC A 412 bound to ASN A 109
5AC5SOFTWARETRP A:27 , GLN A:135 , ASN A:159 , VAL A:200 , CYS A:201 , ASN A:202 , GLY A:207 , NAG A:403 , HOH A:2042 , HOH A:2054Binding site for Poly-Saccharide residues NAG A 401 through FUC A 402 bound to ASN A 159

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:42 -A:58
2A:136 -A:201
3A:168 -A:182
4A:191 -A:220

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5A0B)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5A0B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5A0B)

(-) Exons   (0, 0)

(no "Exon" information available for 5A0B)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee........eeeeee..eeeeeeeeee..eeeehhhhhh..hhhh.eeee............eeeeeeeee.............eeeee..........................eeeeee...........eeeeeeee........eeee...............eeee..eeeeeeee...........eeeee...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5a0b A   16 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGGIASVLQELNVTVVTSLCRRSNVCTLVRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ  243
                                    25        35||      46        56       63C        73        83      ||94       104       114       124       134       144||     158       177      186A|      195      |209       219 |     228       238     
                                               36|                       63A||                         90|                                                  145|             166||      186A|             202|          220A                       
                                                38                        63B|                          92                                                   150              168|       186B              207                                     
                                                                           63C                                                                                                 177
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5A0B)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5A0B)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5A0B)

(-) Gene Ontology  (40, 40)

Asymmetric/Biological Unit(hide GO term definitions)

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  5a0b
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  ELNE_HUMAN | P08246
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  3.4.21.37
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ELNE_HUMAN | P08246: 1b0f 1h1b 1hne 1ppf 1ppg 2rg3 2z7f 3q76 3q77 4nzl 4wvp 5a09 5a0a 5a0c 5a8x 5a8y 5a8z 5abw

(-) Related Entries Specified in the PDB File

5a09 CRYSTAL STRUCTURE OF HUMAN NEUTROPHIL ELASTASE IN COMPLEX WITH A DIHYDROPYRIMIDONE INHIBITOR
5a0a CRYSTAL STRUCTURE OF HUMAN NEUTROPHIL ELASTASE IN COMPLEX WITH A DIHYDROPYRIMIDONE INHIBITOR
5a0c CRYSTAL STRUCTURE OF HUMAN NEUTROPHIL ELASTASE IN COMPLEX WITH A DIHYDROPYRIMIDONE INHIBITOR