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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN NEUTROPHIL ELASTASE IN COMPLEX WITH A DIHYDROPYRIMIDONE INHIBITOR
 
Authors :  F. Vonnussbaum, V. M. -J. Li, S. Allerheiligen, S. Anlauf, L. Baerfacke M. Bechem, M. Delbeck, M. F. Fitzgerald, M. Gerisch, H. Gielen-Haertw H. Haning, D. Karthaus, D. Lang, K. Lustig, D. Meibom, J. Mittendorf, U. Rosentreter, M. Schaefer, S. Schaefer, J. Schamberger, L. A. Telan A. Tersteegen
Date :  17 Apr 15  (Deposition) - 19 Aug 15  (Release) - 22 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.78
Chains :  Asym./Biol. Unit :  E
Keywords :  Trypsin Family Fold, Protease, Hydrolase, Hydrolase- Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Von Nussbaum, V. M. Li, S. Allerheiligen, S. Anlauf, L. Barfacker, M. Bechem, M. Delbeck, M. F. Fitzgerald, M. Gerisch, H. Gielen-Haertwig, H. Haning, D. Karthaus, D. Lang, K. Lustig, D. Meibom, J. Mittendorf, U. Rosentreter, M. Schafer, S. Schafer, J. Schamberger, L. A. Telan, A. Tersteegen
Freezing The Bioactive Conformation To Boost Potency: The Identification Of Bay 85-8501, A Selective And Potent Inhibitor Of Human Neutrophil Elastase For Pulmonary Diseases.
Chemmedchem V. 10 1163 2015
PubMed-ID: 26083237  |  Reference-DOI: 10.1002/CMDC.201500131

(-) Compounds

Molecule 1 - NEUTROPHIL ELASTASE
    Chains: E
    EC Number: 3.4.21.37
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BONE MARROW SERINE PROTEASE, ELASTASE-2, HUMAN LEUKOCYTE EL ASTASE, HLE, MEDULLASIN, PMN ELASTASE, ELASTASE, HLE, MEDULIASIN, PMN ELASTASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : E

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2FUC2Ligand/IonALPHA-L-FUCOSE
3JJS1Ligand/Ion5-[(6R)-5-ETHANOYL-4-METHYL-2-OXIDANYLIDENE-3-[3-(TRIFLUOROMETHYL)PHENYL]-1,6-DIHYDROPYRIMIDIN-6-YL]PYRIDINE-2-CARBONITRILE
4NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS E:57 , TYR E:94 , LEU E:99 , ASP E:102 , VAL E:190 , CYS E:191 , PHE E:192 , ASP E:194 , SER E:195 , ALA E:213 , SER E:214 , PHE E:215 , VAL E:216 , TYR E:224 , HOH E:2079 , HOH E:2156 , HOH E:2174BINDING SITE FOR RESIDUE JJS E 1244
2AC2SOFTWARENAG E:1245 , FUC E:1246 , HOH E:2178 , HOH E:2179BINDING SITE FOR RESIDUE NAG E 1247
3AC3SOFTWAREVAL E:120 , GLN E:122 , ARG E:128 , LEU E:130 , ASN E:202 , LEU E:208 , HIS E:210 , HOH E:2089 , HOH E:2094 , HOH E:2103 , HOH E:2104BINDING SITE FOR RESIDUE EPE E 1250
4AC4SOFTWAREARG E:63B , VAL E:64 , ARG E:65 , ALA E:84 , ASN E:109 , HOH E:2180 , HOH E:2181 , HOH E:2182Binding site for Poly-Saccharide residues NAG E1248 through FUC E1249 bound to ASN E 109
5AC5SOFTWARETRP E:27 , GLU E:90 , GLN E:135 , LEU E:137 , ASN E:159 , VAL E:200 , CYS E:201 , ASN E:202 , GLY E:207 , NAG E:1247 , HOH E:2116 , HOH E:2117 , HOH E:2177Binding site for Poly-Saccharide residues NAG E1245 through FUC E1246 bound to ASN E 159

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1E:42 -E:58
2E:136 -E:201
3E:168 -E:182
4E:191 -E:220

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5A0A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5A0A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5A0A)

(-) Exons   (0, 0)

(no "Exon" information available for 5A0A)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain E from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee........eeeeee..eeeeeeeeee..eeeehhhhh...hhhh.eeee............eeeeeeeeee............eeeee..........................eeeeee............eeeeeeee........eeee...............eeee..eeeeeeee...........eeeee...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5a0a E   16 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRGIASVLQELNVTVVTSLCRRSNVCTLVRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ  243
                                    25        35||      46        56       63C        73        83      ||94       104       114       124       134       144 ||    157       168|      186||     194       208       218  |    227       237      
                                               36|                       63A||                         90|                                                   146|             166||      186A|             202|          220A                       
                                                38                        63B|                          92                                                    150              168|       186B              207                                     
                                                                           63C                                                                                                  177
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5A0A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5A0A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5A0A)

(-) Gene Ontology  (40, 40)

Asymmetric/Biological Unit(hide GO term definitions)

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  5a0a
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  ELNE_HUMAN | P08246
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  3.4.21.37
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ELNE_HUMAN | P08246: 1b0f 1h1b 1hne 1ppf 1ppg 2rg3 2z7f 3q76 3q77 4nzl 4wvp 5a09 5a0b 5a0c 5a8x 5a8y 5a8z 5abw

(-) Related Entries Specified in the PDB File

5a09 CRYSTAL STRUCTURE OF HUMAN NEUTROPHIL ELASTASE IN COMPLEX WITH A DIHYDROPYRIMIDONE INHIBITOR
5a0b CRYSTAL STRUCTURE OF HUMAN NEUTROPHIL ELASTASE IN COMPLEX WITH A DIHYDROPYRIMIDONE INHIBITOR
5a0c CRYSTAL STRUCTURE OF HUMAN NEUTROPHIL ELASTASE IN COMPLEX WITH A DIHYDROPYRIMIDONE INHIBITOR