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(-) Description

Title :  NEUTROPHIL ELASTASE INHIBITORS FOR THE TREATMENT OF (CARDIO)PULMONARY DISEASES
 
Authors :  F. Vonnussbaum, V. M. Li, M. Schaefer
Date :  10 Aug 15  (Deposition) - 19 Aug 15  (Release) - 22 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Trypsin Family Fold, Protease, Hydrolase, Hydrolase-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Von Nussbaum, V. M. Li
Neutrophil Elastase Inhibitors For The Treatment Of (Cardio)Pulmonary Diseases: Into Clinical Testing With Pre-Adaptive Pharmacophores.
Bioorg. Med. Chem. Lett. V. 25 4370 2015
PubMed-ID: 26358162  |  Reference-DOI: 10.1016/J.BMCL.2015.08.049

(-) Compounds

Molecule 1 - NEUTROPHIL ELASTASE
    Chains: A
    EC Number: 3.4.21.37
    Fragment: UNP RESIDUES 30-247
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BONE MARROW SERINE PROTEASE, ELASTASE-2, HUMAN LEUKOCYTE ELASTASE, HLE, MEDULLASIN, PMN ELASTASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2FUC1Ligand/IonALPHA-L-FUCOSE
3NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
4WQQ1Ligand/Ion1-(3-CHLOROPHENYL)-5-(3,5-DIMETHYLISOXAZOL-4-YL)-6-METHYL-N-[4-(METHYLSULFONYL)BENZYL]-2-OXO-1,2-DIHYDROPYRIDINE-3-CARBOXAMIDE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:57 , ARG A:177 , CYS A:191 , PHE A:192 , SER A:195 , ALA A:213 , SER A:214 , PHE A:215 , VAL A:216 , ARG A:217 , CL A:1247 , HOH A:2094 , HOH A:2288 , HOH A:2313 , HOH A:2318 , HOH A:2320 , HOH A:2350 , HOH A:2352 , HOH A:2353BINDING SITE FOR RESIDUE WQQ A 1001
2AC2SOFTWAREGLY A:218 , WQQ A:1001 , HOH A:2354BINDING SITE FOR RESIDUE CL A 1247
3AC3SOFTWAREARG A:128 , ARG A:129 , HOH A:2236BINDING SITE FOR RESIDUE CL A 1248
4AC4SOFTWAREASN A:63 , LEU A:166 , HOH A:2280BINDING SITE FOR RESIDUE CL A 1249
5AC5SOFTWARETRP A:27 , GLU A:90 , GLN A:135 , ASN A:159 , VAL A:200 , CYS A:201 , ASN A:202 , GLY A:207 , HOH A:2165 , HOH A:2252 , HOH A:2254 , HOH A:2255 , HOH A:2356 , HOH A:2357 , HOH A:2358 , HOH A:2359 , HOH A:2360 , HOH A:2362Binding site for Poly-Saccharide residues NAG A1244 through NAG A1246 bound to ASN A 159

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:42 -A:58
2A:136 -A:201
3A:168 -A:182
4A:191 -A:220

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5ABW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5ABW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ABW)

(-) Exons   (0, 0)

(no "Exon" information available for 5ABW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee........eeeeee..eeeeeeeeee..eeeehhhhhh..hhhh.eeee............eeeeeeeeee............eeeee..........................eeeeee...........eeeeeeee........eeee...............eeee..eeeeeeee...........eeeee...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5abw A   16 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGGIASVLQELNVTVVTSLCRRSNVCTLVRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ  243
                                    25        35||      46        56       63C        73        83      ||94       104       114       124       134       144||     158       177      186A|      195      |209       219 |     228       238     
                                               36|                       63A||                         90|                                                  145|             166||      186A|             202|          220A                       
                                                38                        63B|                          92                                                   150              168|       186B              207                                     
                                                                           63C                                                                                                 177
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ABW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ABW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ABW)

(-) Gene Ontology  (40, 40)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ELNE_HUMAN | P08246: 1b0f 1h1b 1hne 1ppf 1ppg 2rg3 2z7f 3q76 3q77 4nzl 4wvp 5a09 5a0a 5a0b 5a0c 5a8x 5a8y 5a8z

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5ABW)