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(-) Description

Title :  STRUCTURE OF HUMAN PARP1 CATALYTIC DOMAIN BOUND TO AN ISOINDOLINONE INHIBITOR
 
Authors :  E. Casale, M. Fasolini, G. Papeo, H. Posteri, D. Borghi, A. A. Busel, F. C M. Ciomei, A. Cirla, E. Corti, M. Danello, M. Fasolini, E. R. Felder, B. A. Galvani, A. Isacchi, A. Khvat, M. Y. Krasavin, R. Lupi, P. Orsini, R. E. Pesenti, D. Pezzetta, S. Rainoldi, F. Riccardisirtori, A. Scolaro F. Zuccotto, D. Donati, A. Montagnoli
Date :  15 Apr 15  (Deposition) - 12 Aug 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Human Parp1, Artd1 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. M. E. Papeo, H. Posteri, D. Borghi, A. A. Busel, F. Caprera, E. Casale M. Ciomei, A. Cirla, E. Corti, M. D'Anello, M. Fasolini, B. Forte, A. Galvani, A. Isacchi, A. Khvat, M. Y. Krasavin, R. Lupi, P. Orsini, R. Perego, E. Pesenti, D. Pezzetta, S. Rainoldi, F. Riccardi-Sirtori A. Scolaro, F. Sola, F. Zuccotto, E. R. Felder, D. Donati, A. Montagnol
Discovery Of 2-[1-(4, 4-Difluorocyclohexyl)Piperidin-4-Yl]-6- Fluoro-3-Oxo-2, 3-Dihydro-1H-Isoindole-4-Carboxamide (Nms- P118): A Potent, Orally Available And Highly Selective Parp- 1 Inhibitor For Cancer Therapy.
J. Med. Chem. V. 58 6875 2015
PubMed-ID: 26222319  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00680

(-) Compounds

Molecule 1 - POLY [ADP-RIBOSE] POLYMERASE 1
    Chains: A
    EC Number: 2.4.2.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: NEB T7 EXPRESS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: CATALYTIC DOMAIN, RESIDUES 665-1014
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PARP-1, ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 1, ARTD1, NAD(+) ADP-RIBOSYLTRANSFERASE 1, ADPRT 1, POLYADP-RIBOSE SYNTHASE 1, POLY ADP-RIBOSE POLYMERASE 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1D7N1Ligand/Ion2-[1-(4,4-DIFLUOROCYCLOHEXYL)-PIPERIDIN-4-YL]-6-FLUORO-3-OXO-2,3-DIHYDRO-1H-ISOINDOLE-4-CARBOXAMIDE
2SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:759 , VAL A:762 , HIS A:862 , GLY A:863 , THR A:887 , GLY A:888 , TYR A:889 , TYR A:896 , PHE A:897 , ALA A:898 , LYS A:903 , SER A:904 , TYR A:907 , GLU A:988BINDING SITE FOR RESIDUE D7N A2012
2AC2SOFTWARELYS A:903 , LEU A:985 , TYR A:986BINDING SITE FOR RESIDUE SO4 A2013
3AC3SOFTWAREARG A:858 , ASN A:928 , MET A:929 , LYS A:945 , LYS A:949BINDING SITE FOR RESIDUE SO4 A2014

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5A00)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5A00)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5A00)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5A00)

(-) Exons   (0, 0)

(no "Exon" information available for 5A00)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:340
                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.eeeee....hhhhhhhhhhhhhh.......eeeeeeeeeeeee.hhhhhhhhhhh...eeeeeee.hhhhhhhhhhhh..................eee..hhhhhhhhhh......eeeeeeeeee...eeee..............eeee...eee.hhhheee..eee....eee...........eeee.hhh.eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5a00 A  662 KSKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDPPLLNNADSVQAKVEMLDNLLDIEVAYSLLRGGSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGISSGVNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 1010
                                   671       681       691       701       711       721       731       741 ||    756       766       776     ||790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010
                                                                                                           743|                              782|                                                                                                                                                                                                                               
                                                                                                            749                               787
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5A00)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5A00)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5A00)

(-) Gene Ontology  (63, 63)

Asymmetric/Biological Unit(hide GO term definitions)

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  5a00
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  PARP1_HUMAN | P09874
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PARP1_HUMAN | P09874: 1uk0 1uk1 1wok 2cok 2cr9 2cs2 2dmj 2jvn 2l30 2l31 2n8a 2rcw 2rd6 2riq 3gjw 3gn7 3l3l 3l3m 3od8 3oda 3odc 3ode 4av1 4dqy 4gv7 4hhy 4hhz 4l6s 4opx 4oqa 4oqb 4pjt 4r5w 4r6e 4rv6 4und 4uxb 4xhu 4zzz 5ds3 5ha9 5kpn 5kpo 5kpp 5kpq 5wrq 5wry 5wrz 5ws0 5ws1 5wtc

(-) Related Entries Specified in the PDB File

4zzx STRUCTURE OF PARP2 CATALYTIC DOMAIN BOUND TO AN ISOINDOLINONE INHIBITOR
4zzy STRUCTURE OF HUMAN PARP2 CATALYTIC DOMAIN BOUND TO AN ISOINDOLINONE INHIBITOR
4zzz STRUCTURE OF HUMAN PARP1 CATALYTIC DOMAIN BOUND TO AN ISOINDOLINONE INHIBITOR