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(-) Description

Title :  CRYSTAL STRUCTURE OF CONSTITUTIVELY ACTIVE PARP-1
 
Authors :  M. F. Langelier, J. M. Pascal
Date :  16 Sep 15  (Deposition) - 27 Jul 16  (Release) - 27 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Adp-Ribosyl Transferase, Parp-1, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Dawicki-Mckenna, M. F. Langelier, J. E. Denizio, A. A. Riccio, C. D. Cao, K. R. Karch, M. Mccauley, J. D. Steffen, B. E. Black, J. M. Pascal
Parp-1 Activation Requires Local Unfolding Of An Autoinhibitory Domain.
Mol. Cell V. 60 755 2015
PubMed-ID: 26626480  |  Reference-DOI: 10.1016/J.MOLCEL.2015.10.013

(-) Compounds

Molecule 1 - POLY [ADP-RIBOSE] POLYMERASE 1
    Chains: A
    EC Number: 2.4.2.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: CATALYTIC DOMAIN (UNP RESIDUES 788-1012)
    Gene: PARP1, ADPRT, PPOL
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PARP-1,ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 1,ARTD1, NAD(+) ADP-RIBOSYLTRANSFERASE 1,ADPRT 1,POLY[ADP-RIBOSE] SYNTHASE 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
109L1Ligand/Ion4-(3-{[4-(CYCLOPROPYLCARBONYL)PIPERAZIN-1-YL]CARBONYL}-4-FLUOROBENZYL)PHTHALAZIN-1(2H)-ONE
21PE1Ligand/IonPENTAETHYLENE GLYCOL
3SO42Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:865 , ASN A:906 , TYR A:907 , HIS A:909binding site for residue 1PE A 1101
2AC2SOFTWAREHIS A:862 , GLY A:863 , LEU A:877 , ARG A:878 , TYR A:889 , GLY A:894 , ILE A:895 , TYR A:896 , PHE A:897 , SER A:904 , TYR A:907 , GLU A:988binding site for residue 09L A 1102
3AC3SOFTWARELYS A:903 , LEU A:984 , LEU A:985 , TYR A:986binding site for residue SO4 A 1103
4AC4SOFTWAREARG A:858 , MET A:929 , LYS A:949binding site for residue SO4 A 1104

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:845 -A:845

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DS3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DS3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DS3)

(-) Exons   (0, 0)

(no "Exon" information available for 5DS3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                    
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh........hhhhhhhh..eeeee....hhhhhhhhhhhhhh.....eeeeeeeeeeee.hhhhhhhhhh....eeeeeee.hhhhhhhhhhhh..................eee..hhhhhhhhhh......eeeeeeeeee...eeee..............eeee.eeeee.hhhheee..eee....eee.......eee.eeee.hhh.eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5ds3 A  765 SKLPKPVQDLIKMIFGSGSGSGGDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHHNAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGISSGVNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 1010
                                   774       784       794       804       814       827       837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007   
                                                                                   822|                                                                                                                                                                                        
                                                                                    826
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DS3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DS3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DS3)

(-) Gene Ontology  (63, 63)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  5ds3
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  PARP1_HUMAN | P09874
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  2.4.2.30
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PARP1_HUMAN | P09874: 1uk0 1uk1 1wok 2cok 2cr9 2cs2 2dmj 2jvn 2l30 2l31 2n8a 2rcw 2rd6 2riq 3gjw 3gn7 3l3l 3l3m 3od8 3oda 3odc 3ode 4av1 4dqy 4gv7 4hhy 4hhz 4l6s 4opx 4oqa 4oqb 4pjt 4r5w 4r6e 4rv6 4und 4uxb 4xhu 4zzz 5a00 5ha9 5kpn 5kpo 5kpp 5kpq 5wrq 5wry 5wrz 5ws0 5ws1 5wtc

(-) Related Entries Specified in the PDB File

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